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Strontium in PDB 1g1s: P-Selectin Lectin/Egf Domains Complexed with Psgl-1 Peptide

Protein crystallography data

The structure of P-Selectin Lectin/Egf Domains Complexed with Psgl-1 Peptide, PDB code: 1g1s was solved by W.S.Somers, R.T.Camphausen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.90
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 63.445, 96.756, 187.289, 90.00, 90.00, 90.00
R / Rfree (%) 20.4 / 23.5

Other elements in 1g1s:

The structure of P-Selectin Lectin/Egf Domains Complexed with Psgl-1 Peptide also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Strontium Binding Sites:

The binding sites of Strontium atom in the P-Selectin Lectin/Egf Domains Complexed with Psgl-1 Peptide (pdb code 1g1s). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 2 binding sites of Strontium where determined in the P-Selectin Lectin/Egf Domains Complexed with Psgl-1 Peptide, PDB code: 1g1s:
Jump to Strontium binding site number: 1; 2;

Strontium binding site 1 out of 2 in 1g1s

Go back to Strontium Binding Sites List in 1g1s
Strontium binding site 1 out of 2 in the P-Selectin Lectin/Egf Domains Complexed with Psgl-1 Peptide


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of P-Selectin Lectin/Egf Domains Complexed with Psgl-1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr901

b:34.6
occ:1.00
OD1 A:ASP106 2.3 42.8 1.0
O3 D:FUC632 2.5 36.6 1.0
O A:ASP106 2.5 28.8 1.0
OD1 A:ASN105 2.5 28.0 1.0
OD1 A:ASN82 2.6 38.1 1.0
OE1 A:GLU88 2.6 28.5 1.0
O4 D:FUC632 2.8 31.6 1.0
OE1 A:GLU80 2.8 39.7 1.0
CG A:ASP106 3.3 41.9 1.0
CG A:ASN82 3.5 42.7 1.0
C3 D:FUC632 3.5 31.5 1.0
CG A:ASN105 3.5 35.5 1.0
CD A:GLU80 3.6 44.8 1.0
C4 D:FUC632 3.6 34.3 1.0
C A:ASP106 3.6 32.0 1.0
CD A:GLU88 3.7 36.2 1.0
ND2 A:ASN105 3.8 33.0 1.0
OE2 A:GLU80 3.8 39.6 1.0
N A:ASP106 3.9 32.8 1.0
C2 D:FUC632 3.9 31.4 1.0
OD2 A:ASP106 4.0 33.5 1.0
N A:ASN82 4.0 37.8 1.0
ND2 A:ASN82 4.0 39.7 1.0
OE2 A:GLU88 4.1 35.4 1.0
CA A:ASP106 4.2 32.5 1.0
CB A:ASP106 4.3 33.8 1.0
N A:ASN83 4.4 39.6 1.0
O2 D:FUC632 4.5 34.5 1.0
CB A:ASN82 4.5 40.4 1.0
CA A:ASN82 4.6 40.5 1.0
N A:LYS84 4.7 39.0 1.0
C A:ASN82 4.8 42.9 1.0
N A:GLU107 4.8 25.6 1.0
CG A:GLU80 4.8 35.8 1.0
C A:ASN105 4.8 28.6 1.0
CB A:ASN105 4.9 27.9 1.0
OE2 A:GLU107 4.9 37.1 1.0
CG A:GLU88 4.9 31.3 1.0
CB A:GLU88 4.9 34.0 1.0

Strontium binding site 2 out of 2 in 1g1s

Go back to Strontium Binding Sites List in 1g1s
Strontium binding site 2 out of 2 in the P-Selectin Lectin/Egf Domains Complexed with Psgl-1 Peptide


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of P-Selectin Lectin/Egf Domains Complexed with Psgl-1 Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr902

b:40.2
occ:1.00
OD1 B:ASP106 2.2 39.7 1.0
OD1 B:ASN105 2.5 34.2 1.0
O B:ASP106 2.5 30.7 1.0
O3 C:FUC632 2.6 32.9 1.0
OE1 B:GLU88 2.6 34.0 1.0
OD1 B:ASN82 2.6 42.8 1.0
OE1 B:GLU80 2.7 35.6 1.0
O4 C:FUC632 2.7 36.6 1.0
CG B:ASP106 3.3 36.5 1.0
CG B:ASN82 3.4 42.2 1.0
CD B:GLU80 3.5 40.7 1.0
C3 C:FUC632 3.5 32.3 1.0
CG B:ASN105 3.5 38.9 1.0
C4 C:FUC632 3.6 33.9 1.0
C B:ASP106 3.6 29.0 1.0
CD B:GLU88 3.7 37.9 1.0
OE2 B:GLU80 3.7 38.4 1.0
N B:ASP106 3.8 37.1 1.0
ND2 B:ASN82 3.9 39.5 1.0
ND2 B:ASN105 3.9 32.4 1.0
C2 C:FUC632 3.9 37.7 1.0
OD2 B:ASP106 4.0 42.2 1.0
OE2 B:GLU88 4.1 38.1 1.0
CA B:ASP106 4.1 32.2 1.0
N B:ASN82 4.1 43.8 1.0
CB B:ASP106 4.3 35.5 1.0
N B:ASN83 4.5 46.5 1.0
O2 C:FUC632 4.6 44.6 1.0
CB B:ASN82 4.6 44.1 1.0
CG B:GLU80 4.7 40.0 1.0
C B:ASN105 4.7 36.8 1.0
CA B:ASN82 4.7 46.0 1.0
N B:GLU107 4.8 33.4 1.0
N B:LYS84 4.8 41.9 1.0
OE2 B:GLU107 4.8 38.4 1.0
CB B:ASN105 4.9 31.0 1.0
C B:ASN82 4.9 50.9 1.0
CG B:GLU88 4.9 34.8 1.0
CB B:GLU88 5.0 37.0 1.0
C5 C:FUC632 5.0 38.7 1.0

Reference:

W.S.Somers, J.Tang, G.D.Shaw, R.T.Camphausen. Insights Into the Molecular Basis of Leukocyte Tethering and Rolling Revealed By Structures of P- and E-Selectin Bound to Sle(X) and Psgl-1. Cell(Cambridge,Mass.) V. 103 467 2000.
ISSN: ISSN 0092-8674
PubMed: 11081633
DOI: 10.1016/S0092-8674(00)00138-0
Page generated: Wed Dec 16 02:10:36 2020

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