Strontium in the structure of X-Ray Analysis of A Rna Tetraplex R(Uggggu)4 At Ultra-High Resolution (pdb 1j8g)

The binding sites of Strontium atom in the structure of X-Ray Analysis of A Rna Tetraplex R(Uggggu)4 At Ultra-High Resolution (pdb code 1j8g). This binding sites where shown with 5.0 Angstroms radius around Strontium atom. The 1j8g structure was solved by J.DENG, Y.XIONG, M.SUNDARALINGAM, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 20.0-0.6 Space group P4212 a (A) 36.154 b (A) 36.154 c (A) 74.134 alpha (°) 90.00 beta (°) 90.00 gamma (°) 90.00 Rfactor (%) n/a Rfree (%) 11.2 Strontium Binding Sites: Strontium binding site 1 out of 8 in 1j8g Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Strontium in the PDB 1j8g. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G4, A: G5, A: Na512, conact list: Atom Atom Distance (A) Sr C6 A:G4 3.54 Sr N1 A:G4 3.87 Sr C5 A:G4 4.80 Sr O6 A:G4 2.61 Sr C6 A:G5 3.62 Sr N1 A:G5 4.03 Sr C5 A:G5 4.89 Sr O6 A:G5 2.61 Sr NA A:Na512 4.87 Sr NA A:Na512 3.23 interactive model: Strontium binding site 2 out of 8 in 1j8g Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Strontium in the PDB 1j8g. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: G2, A: G3, conact list: Atom Atom Distance (A) Sr C6 A:G2 3.56 Sr N1 A:G2 3.92 Sr C5 A:G2 4.81 Sr O6 A:G2 2.60 Sr C6 A:G3 3.60 Sr N1 A:G3 3.96 Sr C5 A:G3 4.86 Sr O6 A:G3 2.60 interactive model: Strontium binding site 3 out of 8 in 1j8g Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Strontium in the PDB 1j8g. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: G12, B: G13, conact list: Atom Atom Distance (A) Sr C6 B:G12 3.57 Sr N1 B:G12 3.92 Sr C5 B:G12 4.82 Sr O6 B:G12 2.59 Sr C6 B:G13 3.61 Sr N1 B:G13 3.97 Sr C5 B:G13 4.87 Sr O6 B:G13 2.61 interactive model: Strontium binding site 4 out of 8 in 1j8g Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Strontium in the PDB 1j8g. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: G14, B: G15, B: Na513, conact list: Atom Atom Distance (A) Sr C6 B:G14 3.55 Sr N1 B:G14 3.87 Sr C5 B:G14 4.79 Sr O6 B:G14 2.61 Sr C6 B:G15 3.63 Sr N1 B:G15 4.02 Sr C5 B:G15 4.89 Sr O6 B:G15 2.60 Sr NA B:Na513 4.24 interactive model: Strontium binding site 5 out of 8 in 1j8g Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Strontium in the PDB 1j8g. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: G22, C: G23, conact list: Atom Atom Distance (A) Sr C6 C:G22 3.58 Sr N1 C:G22 3.93 Sr C5 C:G22 4.84 Sr O6 C:G22 2.61 Sr C6 C:G23 3.61 Sr N1 C:G23 3.96 Sr C5 C:G23 4.87 Sr O6 C:G23 2.61 interactive model: Strontium binding site 6 out of 8 in 1j8g Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Strontium in the PDB 1j8g. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: C: G24, C: G25, C: Hoh102, conact list: Atom Atom Distance (A) Sr C6 C:G24 3.60 Sr N1 C:G24 3.93 Sr C5 C:G24 4.83 Sr O6 C:G24 2.66 Sr C6 C:G25 3.62 Sr N1 C:G25 3.97 Sr C5 C:G25 4.92 Sr O6 C:G25 2.60 Sr O C:Hoh102 2.81 interactive model: Strontium binding site 7 out of 8 in 1j8g Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 7 of Strontium in the PDB 1j8g. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: G34, D: G35, D: Hoh95, conact list: Atom Atom Distance (A) Sr C6 D:G34 3.54 Sr N1 D:G34 3.88 Sr C5 D:G34 4.79 Sr O6 D:G34 2.61 Sr C6 D:G35 3.62 Sr N1 D:G35 4.01 Sr C5 D:G35 4.87 Sr O6 D:G35 2.60 Sr O D:Hoh95 4.87 interactive model: Strontium binding site 8 out of 8 in 1j8g Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 8 of Strontium in the PDB 1j8g. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: G32, D: G33, conact list: Atom Atom Distance (A) Sr C6 D:G32 3.57 Sr N1 D:G32 3.93 Sr C5 D:G32 4.83 Sr O6 D:G32 2.60 Sr C6 D:G33 3.61 Sr N1 D:G33 3.96 Sr C5 D:G33 4.87 Sr O6 D:G33 2.61 interactive model: