Strontium in PDB 1nvy: Strontium Bound to the Holliday Junction Sequence D(Tcggtaccga)4

The structure of Strontium Bound to the Holliday Junction Sequence D(Tcggtaccga)4, PDB code: 1nvy was solved by C.J.Cardin, J.H.Thorpe, B.C.Gale, S.C.M.Teixeira, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.30 / 1.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	63.734, 25.320, 36.493, 90.00, 110.11, 90.00
R / Rfree (%)	20.7 / 26.3

The binding sites of Strontium atom in the Strontium Bound to the Holliday Junction Sequence D(Tcggtaccga)4 (pdb code 1nvy). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 5 binding sites of Strontium where determined in the Strontium Bound to the Holliday Junction Sequence D(Tcggtaccga)4, PDB code: 1nvy:
Jump to Strontium binding site number: 1; 2; 3; 4; 5;

Strontium binding site 1 out of 5 in the Strontium Bound to the Holliday Junction Sequence D(Tcggtaccga)4


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Strontium Bound to the Holliday Junction Sequence D(Tcggtaccga)4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr103 b:30.7 occ:1.00 O B:HOH638 2.4 30.9 1.0 O A:HOH490 2.5 32.5 1.0 O B:HOH492 2.5 58.6 1.0 O A:HOH491 2.6 22.3 1.0 O B:HOH493 2.6 28.6 1.0 O B:HOH488 2.6 20.9 1.0 O A:HOH489 2.9 33.8 1.0 N2 A:DG3 4.4 18.2 1.0 O A:HOH502 4.4 25.7 1.0 N2 A:DG4 4.4 18.9 1.0 O B:HOH512 4.5 31.0 1.0 O2 B:DC8 4.5 18.1 1.0 O B:HOH501 4.5 25.2 1.0 O A:HOH523 4.8 23.4 1.0 O4' A:DT5 4.8 25.7 1.0 O4' B:DG9 4.8 26.4 1.0 O B:HOH539 4.9 22.6 1.0 N3 A:DG4 5.0 20.3 1.0

Strontium binding site 2 out of 5 in the Strontium Bound to the Holliday Junction Sequence D(Tcggtaccga)4


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Strontium Bound to the Holliday Junction Sequence D(Tcggtaccga)4 within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr104 b:36.5 occ:1.00 O B:HOH495 2.5 29.5 1.0 O A:HOH497 2.5 23.3 1.0 O A:HOH500 2.6 38.1 1.0 O A:HOH496 2.7 39.5 1.0 O B:HOH498 2.7 27.4 1.0 O B:HOH494 2.7 29.8 1.0 O A:HOH499 2.8 24.6 1.0 O B:HOH561 4.1 20.8 0.5 N2 B:DG9 4.3 17.4 1.0 O A:HOH514 4.4 30.0 1.0 O2 A:DC2 4.4 18.4 1.0 O A:HOH540 4.6 28.3 1.0 O4' A:DG3 4.8 32.6 1.0 N3 B:DA10 4.9 19.0 1.0 O4' A:DC2 4.9 21.4 1.0

Strontium binding site 3 out of 5 in the Strontium Bound to the Holliday Junction Sequence D(Tcggtaccga)4


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of Strontium Bound to the Holliday Junction Sequence D(Tcggtaccga)4 within 5.0Å range: probe atom residue distance (Å) B Occ B:Sr101 b:22.8 occ:1.00 O B:HOH472 2.5 24.2 1.0 O B:HOH476 2.5 23.1 1.0 O B:HOH473 2.6 17.9 1.0 O B:HOH478 2.6 17.5 1.0 O B:HOH477 2.6 21.0 1.0 O B:HOH474 2.7 21.8 1.0 O B:HOH475 2.7 19.5 1.0 O B:HOH479 2.7 21.3 1.0 O B:HOH519 4.5 24.9 1.0 O2 B:DC2 4.5 17.4 1.0 O B:HOH516 4.5 23.9 1.0 O B:HOH521 4.8 40.5 0.5 O4' B:DG3 4.8 19.3 1.0 O B:HOH555 4.8 31.0 0.5 O4' B:DC2 4.9 18.0 1.0

Strontium binding site 4 out of 5 in the Strontium Bound to the Holliday Junction Sequence D(Tcggtaccga)4


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 4 of Strontium Bound to the Holliday Junction Sequence D(Tcggtaccga)4 within 5.0Å range: probe atom residue distance (Å) B Occ B:Sr102 b:27.7 occ:1.00 O B:HOH484 2.5 27.0 1.0 O B:HOH480 2.6 20.8 1.0 O B:HOH482 2.6 29.3 1.0 O B:HOH483 2.6 20.6 1.0 O B:HOH481 2.7 24.2 1.0 O B:HOH486 2.7 24.1 1.0 O B:HOH485 2.7 26.7 1.0 O B:HOH487 2.7 28.7 1.0 O B:HOH522 4.3 31.2 1.0 N2 B:DG4 4.5 18.6 1.0 O B:HOH515 4.6 22.0 1.0 N2 B:DG3 4.7 17.4 1.0 O4' B:DT5 4.7 22.9 1.0 O B:HOH544 4.9 33.2 1.0 O B:HOH556 4.9 30.5 1.0 C4' B:DT5 5.0 27.0 1.0

Strontium binding site 5 out of 5 in the Strontium Bound to the Holliday Junction Sequence D(Tcggtaccga)4


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 5 of Strontium Bound to the Holliday Junction Sequence D(Tcggtaccga)4 within 5.0Å range: probe atom residue distance (Å) B Occ B:Sr105 b:31.2 occ:1.00 O B:HOH466 2.4 23.8 1.0 O B:HOH639 2.4 33.2 1.0 O B:HOH468 2.5 28.2 1.0 O B:HOH470 2.6 26.7 1.0 O B:HOH471 2.6 45.4 1.0 O B:HOH469 2.7 34.2 1.0 O B:HOH467 2.8 33.5 1.0 O B:HOH506 4.4 25.2 1.0 OP1 B:DC7 4.4 23.2 1.0 O B:HOH536 4.5 32.1 1.0 O B:HOH542 4.8 26.9 1.0 OP2 B:DC8 4.9 21.9 1.0 OP1 B:DC8 4.9 22.4 1.0 O B:HOH518 4.9 20.5 1.0 O3' B:DA6 4.9 22.0 1.0

C.J.Cardin, J.H.Thorpe, B.C.Gale, S.C.M.Teixeira. Strontium, A Mad Taerget For the Dna Holliday Junction To Be Published.