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Strontium in PDB 1oq7: The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean).

Enzymatic activity of The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean).

All present enzymatic activity of The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean).:
1.14.19.2;

Protein crystallography data

The structure of The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean)., PDB code: 1oq7 was solved by M.Moche, J.Shanklin, A.K.Ghoshal, Y.Lindqvist, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.96 / 3.20
Space group P 31
Cell size a, b, c (Å), α, β, γ (°) 188.033, 188.033, 82.047, 90.00, 90.00, 120.00
R / Rfree (%) 22.9 / 25.7

Strontium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Strontium atom in the The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean). (pdb code 1oq7). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 12 binding sites of Strontium where determined in the The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean)., PDB code: 1oq7:
Jump to Strontium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Strontium binding site 1 out of 12 in 1oq7

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Strontium binding site 1 out of 12 in the The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean).


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean). within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr364

b:0.2
occ:1.00
 OE2 B:GLU106 2.6 52.5 1.0
OE1 B:GLU106 3.1 53.0 1.0
OE2 A:GLU106 3.2 52.7 1.0
CD B:GLU106 3.2 51.5 1.0
OE1 A:GLU106 3.5 52.9 1.0
OD1 B:ASP148 3.6 52.2 1.0
OD1 A:ASP148 3.6 52.2 1.0
CD A:GLU106 3.7 51.5 1.0
OD1 B:ASN144 4.3 37.3 1.0
OD1 A:ASN144 4.4 37.1 1.0
CG B:GLU106 4.7 44.7 1.0
CG B:ASP148 4.8 47.2 1.0
CG A:ASP148 4.9 47.5 1.0
N B:ASP148 5.0 39.4 1.0

Strontium binding site 2 out of 12 in 1oq7

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Strontium binding site 2 out of 12 in the The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean).


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean). within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Sr364

b:0.3
occ:1.00
 OE2 D:GLU106 2.9 52.7 1.0
OE1 D:GLU106 3.1 53.0 1.0
OE2 C:GLU106 3.1 52.7 1.0
CD D:GLU106 3.4 51.5 1.0
OE1 C:GLU106 3.5 52.9 1.0
OD1 C:ASP148 3.6 52.2 1.0
CD C:GLU106 3.7 51.4 1.0
OD1 C:ASN144 4.0 37.3 1.0
OD1 D:ASP148 4.1 52.2 1.0
OD1 D:ASN144 4.4 37.3 1.0
CG C:ASP148 4.9 47.2 1.0
CG D:GLU106 4.9 44.6 1.0

Strontium binding site 3 out of 12 in 1oq7

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Strontium binding site 3 out of 12 in the The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean).


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean). within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Sr364

b:0.5
occ:1.00
 OE2 E:GLU106 2.7 52.5 1.0
OE1 E:GLU106 3.3 53.0 1.0
OE2 F:GLU106 3.3 52.8 1.0
CD E:GLU106 3.4 51.4 1.0
OD1 E:ASP148 3.4 52.3 1.0
OE1 F:GLU106 3.4 52.7 1.0
CD F:GLU106 3.8 51.4 1.0
OD1 E:ASN144 4.0 37.5 1.0
OD1 F:ASP148 4.1 52.2 1.0
CG E:ASP148 4.6 47.2 1.0
OD1 F:ASN144 4.7 37.2 1.0
O E:ASN144 4.7 37.9 1.0
N E:ASP148 4.8 39.2 1.0
CG E:GLU106 4.9 44.5 1.0

Strontium binding site 4 out of 12 in 1oq7

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Strontium binding site 4 out of 12 in the The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean).


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 4 of The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean). within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr365

b:0.7
occ:1.00
 OD1 B:ASP77 3.5 46.8 1.0
OD1 A:ASP77 3.6 46.9 1.0
CB A:VAL80 4.2 31.7 1.0
CG1 A:VAL80 4.3 28.9 1.0
CG B:ASP77 4.4 42.7 1.0
CG A:ASP77 4.4 42.8 1.0
CE2 B:PHE76 4.6 26.9 1.0
CG2 A:VAL80 4.6 30.3 1.0
CA A:ASP77 4.6 37.3 1.0
CB B:VAL80 4.8 31.5 1.0
O A:ASP77 4.8 37.5 1.0
CG1 B:VAL80 4.9 29.0 1.0
CE2 A:PHE76 4.9 27.1 1.0
CB A:ASP77 4.9 38.5 1.0
CG2 B:VAL80 5.0 29.8 1.0
CA B:ASP77 5.0 37.3 1.0
CD2 B:PHE76 5.0 28.3 1.0

Strontium binding site 5 out of 12 in 1oq7

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Strontium binding site 5 out of 12 in the The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean).


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 5 of The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean). within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Sr365

b:0.3
occ:1.00
 OD1 D:ASP77 3.3 46.8 1.0
OD1 C:ASP77 3.7 46.6 1.0
CG D:ASP77 4.1 42.7 1.0
CG C:ASP77 4.4 42.5 1.0
CG1 C:VAL80 4.6 29.2 1.0
CB C:VAL80 4.6 31.7 1.0
CA D:ASP77 4.7 37.4 1.0
CE2 D:PHE76 4.7 27.0 1.0
CA C:ASP77 4.8 37.2 1.0
CB D:VAL80 4.8 31.6 1.0
CB D:ASP77 4.8 38.6 1.0
OD2 D:ASP77 4.8 47.2 1.0
O C:ASP77 4.9 37.5 1.0
CB C:ASP77 4.9 38.3 1.0
CG1 D:VAL80 4.9 29.0 1.0
CE2 C:PHE76 5.0 26.8 1.0

Strontium binding site 6 out of 12 in 1oq7

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Strontium binding site 6 out of 12 in the The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean).


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 6 of The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean). within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Sr364

b:0.3
occ:1.00
 OD1 F:ASP77 3.5 47.3 1.0
OD1 E:ASP77 3.7 46.6 1.0
CG F:ASP77 4.3 43.0 1.0
CB F:VAL80 4.5 31.6 1.0
CB E:VAL80 4.5 31.8 1.0
CG1 E:VAL80 4.5 29.1 1.0
CE2 F:PHE76 4.5 27.4 1.0
CG E:ASP77 4.6 42.6 1.0
CA F:ASP77 4.6 37.4 1.0
CG1 F:VAL80 4.7 29.3 1.0
CG2 F:VAL80 4.7 30.2 1.0
CG2 E:VAL80 4.8 30.5 1.0
CE2 E:PHE76 4.9 27.3 1.0
O F:ASP77 4.9 37.9 1.0
CB F:ASP77 4.9 38.4 1.0
CD2 F:PHE76 4.9 28.6 1.0
CA E:ASP77 5.0 37.4 1.0

Strontium binding site 7 out of 12 in 1oq7

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Strontium binding site 7 out of 12 in the The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean).


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 7 of The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean). within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr366

b:0.6
occ:1.00
 OD1 B:ASP161 3.8 39.1 1.0
CG A:GLN65 4.1 33.0 1.0
CE1 B:PHE357 4.2 27.6 1.0
OD2 A:ASP70 4.2 38.7 1.0
CG B:ASP161 4.3 36.7 1.0
CZ B:PHE357 4.3 26.9 1.0
OD1 A:ASP70 4.4 35.7 1.0
CB B:ARG163 4.4 31.6 1.0
CG A:ASP70 4.5 35.1 1.0
OD2 B:ASP161 4.6 38.0 1.0
N B:ARG163 4.6 31.9 1.0
CD A:GLN65 4.7 36.3 1.0
CA B:ASP161 5.0 33.5 1.0

Strontium binding site 8 out of 12 in 1oq7

Go back to Strontium Binding Sites List in 1oq7
Strontium binding site 8 out of 12 in the The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean).


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 8 of The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean). within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr364

b:0.2
occ:1.00
 OD1 B:ASP70 3.6 36.0 1.0
OD2 B:ASP70 3.8 38.5 1.0
CE1 A:PHE357 4.0 28.1 1.0
CZ A:PHE357 4.0 26.8 1.0
CG B:ASP70 4.0 35.4 1.0
CG B:GLN65 4.2 33.1 1.0
OD1 A:ASP161 4.2 38.8 1.0
CG A:ASP161 4.6 36.8 1.0
CD B:GLN65 4.7 36.4 1.0
CA A:ASP161 4.9 33.8 1.0
OD2 A:ASP161 5.0 37.9 1.0

Strontium binding site 9 out of 12 in 1oq7

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Strontium binding site 9 out of 12 in the The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean).


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 9 of The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean). within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Sr364

b:0.7
occ:1.00
 OD2 C:ASP70 3.3 39.0 1.0
OD1 C:ASP70 3.6 35.9 1.0
CG C:ASP70 3.7 35.1 1.0
CG C:GLN65 4.3 33.2 1.0
CE1 D:PHE357 4.4 27.8 1.0
CZ D:PHE357 4.4 27.1 1.0
OD1 D:ASP161 4.5 38.8 1.0
CB C:ASP70 4.8 32.5 1.0
CD C:GLN65 4.8 36.3 1.0
NE2 C:GLN65 4.9 38.8 1.0

Strontium binding site 10 out of 12 in 1oq7

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Strontium binding site 10 out of 12 in the The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean).


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 10 of The Crystal Structure of the Iron Free (Apo-)Form of Stearoyl Acyl Carrier Protein Desaturase From Ricinus Communis (Castor Bean). within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Sr365

b:0.2
occ:1.00
 OD1 C:ASP161 3.7 38.5 1.0
CG D:GLN65 3.8 33.3 1.0
OD2 D:ASP70 4.1 38.4 1.0
CB C:ARG163 4.3 31.5 1.0
CG C:ASP161 4.3 36.5 1.0
OD1 D:ASP70 4.4 35.5 1.0
N C:ARG163 4.5 31.8 1.0
CG D:ASP70 4.5 35.2 1.0
CE1 C:PHE357 4.5 27.8 1.0
CD D:GLN65 4.6 36.5 1.0
CZ C:PHE357 4.6 27.1 1.0
OD2 C:ASP161 4.7 37.9 1.0
N C:MET162 4.9 33.2 1.0
NE2 D:GLN65 4.9 38.5 1.0
CB D:GLN65 5.0 33.0 1.0
CA C:ASP161 5.0 33.6 1.0

Reference:

M.Moche, J.Shanklin, A.Ghoshal, Y.Lindqvist. Azide and Acetate Complexes Plus Two Iron-Depleted Crystal Structures of the Di-Iron Enzyme DELTA9 Stearoyl-Acp Desaturase-Implications For Oxygen Activation and Catalytic Intermediates J.Biol.Chem. V. 278 25072 2003.
ISSN: ISSN 0021-9258
PubMed: 12704186
DOI: 10.1074/JBC.M301662200
Page generated: Thu Oct 10 14:04:46 2024

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