Atomistry » Strontium » PDB 1cs7-2grb » 1s8f
Atomistry »
  Strontium »
    PDB 1cs7-2grb »
      1s8f »

Strontium in PDB 1s8f: Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II

Protein crystallography data

The structure of Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II, PDB code: 1s8f was solved by J.G.Wittmann, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.77
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 98.245, 98.245, 79.660, 90.00, 90.00, 90.00
R / Rfree (%) n/a / 22.1

Other elements in 1s8f:

The structure of Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 1 atom

Strontium Binding Sites:

The binding sites of Strontium atom in the Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II (pdb code 1s8f). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 2 binding sites of Strontium where determined in the Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II, PDB code: 1s8f:
Jump to Strontium binding site number: 1; 2;

Strontium binding site 1 out of 2 in 1s8f

Go back to Strontium Binding Sites List in 1s8f
Strontium binding site 1 out of 2 in the Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr2401

b:21.0
occ:1.00
O A:HOH9024 2.3 22.8 1.0
O3B A:GDP3400 2.4 16.9 1.0
O2 A:BEZ1502 2.6 27.0 1.0
O A:HOH9009 2.6 19.2 1.0
O1 A:BEZ1502 2.7 22.9 1.0
O A:HOH9005 2.7 16.6 1.0
OG A:SER1021 2.7 13.4 1.0
O1A A:GDP3400 2.8 23.2 1.0
C A:BEZ1502 3.1 27.6 1.0
O2B A:GDP3400 3.1 17.7 1.0
PB A:GDP3400 3.3 20.1 1.0
CB A:SER1021 3.4 13.9 1.0
PA A:GDP3400 3.9 19.7 1.0
O A:HOH9054 4.1 25.6 1.0
O3A A:GDP3400 4.1 19.5 1.0
O A:HOH9004 4.2 15.2 1.0
O A:HOH9026 4.2 20.9 1.0
O A:HOH9085 4.3 28.4 1.0
O2A A:GDP3400 4.4 16.9 1.0
N A:SER1021 4.5 17.3 1.0
C1 A:BEZ1502 4.5 26.3 1.0
CA A:SER1021 4.5 16.1 1.0
O A:PHE1037 4.6 17.1 1.0
OD1 A:ASP1062 4.6 17.8 1.0
OE2 A:GLU1043 4.6 16.0 1.0
O1B A:GDP3400 4.6 17.2 1.0
OE1 A:GLU1043 4.9 20.4 1.0

Strontium binding site 2 out of 2 in 1s8f

Go back to Strontium Binding Sites List in 1s8f
Strontium binding site 2 out of 2 in the Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr2001

b:37.3
occ:0.50
OG B:SER4071 3.0 14.4 1.0
N B:SER4071 3.3 15.6 1.0
N B:ARG4070 3.5 15.5 1.0
CA B:PHE4069 3.5 24.8 1.0
CB B:SER4071 3.6 12.7 1.0
C B:PHE4069 3.7 16.4 1.0
CB B:PHE4069 3.7 25.4 1.0
CD2 B:PHE4069 4.0 25.6 1.0
CA B:SER4071 4.1 17.6 1.0
C B:ARG4070 4.3 12.8 1.0
CG B:PHE4069 4.3 21.0 1.0
CA B:ARG4070 4.3 15.5 1.0
O B:PHE4069 4.4 18.8 1.0
O A:HOH9012 4.5 19.0 0.5
CB B:ARG4070 4.8 24.8 1.0
N B:PHE4069 4.9 28.9 1.0
O B:ARG4068 4.9 30.9 1.0

Reference:

J.G.Wittmann, M.G.Rudolph. Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II. Febs Lett. V. 568 23 2004.
ISSN: ISSN 0014-5793
PubMed: 15196914
DOI: 10.1016/J.FEBSLET.2004.05.004
Page generated: Wed Dec 16 02:10:41 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy