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Strontium in PDB 1s8f: Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II

Protein crystallography data

The structure of Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II, PDB code: 1s8f was solved by J.G.Wittmann, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.77
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 98.245, 98.245, 79.660, 90.00, 90.00, 90.00
R / Rfree (%) n/a / 22.1

Other elements in 1s8f:

The structure of Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II also contains other interesting chemical elements:

Magnesium (Mg) 1 atom
Chlorine (Cl) 1 atom

Strontium Binding Sites:

The binding sites of Strontium atom in the Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II (pdb code 1s8f). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 2 binding sites of Strontium where determined in the Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II, PDB code: 1s8f:
Jump to Strontium binding site number: 1; 2;

Strontium binding site 1 out of 2 in 1s8f

Go back to Strontium Binding Sites List in 1s8f
Strontium binding site 1 out of 2 in the Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr2401

b:21.0
occ:1.00
O A:HOH9024 2.3 22.8 1.0
O3B A:GDP3400 2.4 16.9 1.0
O2 A:BEZ1502 2.6 27.0 1.0
O A:HOH9009 2.6 19.2 1.0
O1 A:BEZ1502 2.7 22.9 1.0
O A:HOH9005 2.7 16.6 1.0
OG A:SER1021 2.7 13.4 1.0
O1A A:GDP3400 2.8 23.2 1.0
C A:BEZ1502 3.1 27.6 1.0
O2B A:GDP3400 3.1 17.7 1.0
PB A:GDP3400 3.3 20.1 1.0
CB A:SER1021 3.4 13.9 1.0
PA A:GDP3400 3.9 19.7 1.0
O A:HOH9054 4.1 25.6 1.0
O3A A:GDP3400 4.1 19.5 1.0
O A:HOH9004 4.2 15.2 1.0
O A:HOH9026 4.2 20.9 1.0
O A:HOH9085 4.3 28.4 1.0
O2A A:GDP3400 4.4 16.9 1.0
N A:SER1021 4.5 17.3 1.0
C1 A:BEZ1502 4.5 26.3 1.0
CA A:SER1021 4.5 16.1 1.0
O A:PHE1037 4.6 17.1 1.0
OD1 A:ASP1062 4.6 17.8 1.0
OE2 A:GLU1043 4.6 16.0 1.0
O1B A:GDP3400 4.6 17.2 1.0
OE1 A:GLU1043 4.9 20.4 1.0

Strontium binding site 2 out of 2 in 1s8f

Go back to Strontium Binding Sites List in 1s8f
Strontium binding site 2 out of 2 in the Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr2001

b:37.3
occ:0.50
OG B:SER4071 3.0 14.4 1.0
N B:SER4071 3.3 15.6 1.0
N B:ARG4070 3.5 15.5 1.0
CA B:PHE4069 3.5 24.8 1.0
CB B:SER4071 3.6 12.7 1.0
C B:PHE4069 3.7 16.4 1.0
CB B:PHE4069 3.7 25.4 1.0
CD2 B:PHE4069 4.0 25.6 1.0
CA B:SER4071 4.1 17.6 1.0
C B:ARG4070 4.3 12.8 1.0
CG B:PHE4069 4.3 21.0 1.0
CA B:ARG4070 4.3 15.5 1.0
O B:PHE4069 4.4 18.8 1.0
O A:HOH9012 4.5 19.0 0.5
CB B:ARG4070 4.8 24.8 1.0
N B:PHE4069 4.9 28.9 1.0
O B:ARG4068 4.9 30.9 1.0

Reference:

J.G.Wittmann, M.G.Rudolph. Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II. Febs Lett. V. 568 23 2004.
ISSN: ISSN 0014-5793
PubMed: 15196914
DOI: 10.1016/J.FEBSLET.2004.05.004
Page generated: Wed Dec 16 02:10:41 2020

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