Strontium in PDB 1s8f: Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II

The structure of Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II, PDB code: 1s8f was solved by J.G.Wittmann, M.G.Rudolph, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 1.77
Space group	I 41
Cell size a, b, c (Å), α, β, γ (°)	98.245, 98.245, 79.660, 90.00, 90.00, 90.00
R / Rfree (%)	n/a / 22.1

The structure of Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Chlorine	(Cl)	1 atom

The binding sites of Strontium atom in the Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II (pdb code 1s8f). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 2 binding sites of Strontium where determined in the Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II, PDB code: 1s8f:
Jump to Strontium binding site number: 1; 2;

Strontium binding site 1 out of 2 in the Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr2401 b:21.0 occ:1.00 O A:HOH9024 2.3 22.8 1.0 O3B A:GDP3400 2.4 16.9 1.0 O2 A:BEZ1502 2.6 27.0 1.0 O A:HOH9009 2.6 19.2 1.0 O1 A:BEZ1502 2.7 22.9 1.0 O A:HOH9005 2.7 16.6 1.0 OG A:SER1021 2.7 13.4 1.0 O1A A:GDP3400 2.8 23.2 1.0 C A:BEZ1502 3.1 27.6 1.0 O2B A:GDP3400 3.1 17.7 1.0 PB A:GDP3400 3.3 20.1 1.0 CB A:SER1021 3.4 13.9 1.0 PA A:GDP3400 3.9 19.7 1.0 O A:HOH9054 4.1 25.6 1.0 O3A A:GDP3400 4.1 19.5 1.0 O A:HOH9004 4.2 15.2 1.0 O A:HOH9026 4.2 20.9 1.0 O A:HOH9085 4.3 28.4 1.0 O2A A:GDP3400 4.4 16.9 1.0 N A:SER1021 4.5 17.3 1.0 C1 A:BEZ1502 4.5 26.3 1.0 CA A:SER1021 4.5 16.1 1.0 O A:PHE1037 4.6 17.1 1.0 OD1 A:ASP1062 4.6 17.8 1.0 OE2 A:GLU1043 4.6 16.0 1.0 O1B A:GDP3400 4.6 17.2 1.0 OE1 A:GLU1043 4.9 20.4 1.0

Strontium binding site 2 out of 2 in the Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II within 5.0Å range: probe atom residue distance (Å) B Occ B:Sr2001 b:37.3 occ:0.50 OG B:SER4071 3.0 14.4 1.0 N B:SER4071 3.3 15.6 1.0 N B:ARG4070 3.5 15.5 1.0 CA B:PHE4069 3.5 24.8 1.0 CB B:SER4071 3.6 12.7 1.0 C B:PHE4069 3.7 16.4 1.0 CB B:PHE4069 3.7 25.4 1.0 CD2 B:PHE4069 4.0 25.6 1.0 CA B:SER4071 4.1 17.6 1.0 C B:ARG4070 4.3 12.8 1.0 CG B:PHE4069 4.3 21.0 1.0 CA B:ARG4070 4.3 15.5 1.0 O B:PHE4069 4.4 18.8 1.0 O A:HOH9012 4.5 19.0 0.5 CB B:ARG4070 4.8 24.8 1.0 N B:PHE4069 4.9 28.9 1.0 O B:ARG4068 4.9 30.9 1.0

J.G.Wittmann, M.G.Rudolph. Crystal Structure of RAB9 Complexed to Gdp Reveals A Dimer with An Active Conformation of Switch II. Febs Lett. V. 568 23 2004.
ISSN: ISSN 0014-5793
PubMed: 15196914
DOI: 10.1016/J.FEBSLET.2004.05.004