Atomistry » Strontium » PDB 1cs7-2grb » 1u3e
Atomistry »
  Strontium »
    PDB 1cs7-2grb »
      1u3e »

Strontium in PDB 1u3e: Dna Binding and Cleavage By the Hnh Homing Endonuclease I-Hmui

Protein crystallography data

The structure of Dna Binding and Cleavage By the Hnh Homing Endonuclease I-Hmui, PDB code: 1u3e was solved by B.W.Shen, M.Landthaler, D.A.Shub, B.L.Stoddard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.92
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 45.000, 108.300, 248.100, 90.00, 90.00, 90.00
R / Rfree (%) 21.6 / 24.7

Other elements in 1u3e:

The structure of Dna Binding and Cleavage By the Hnh Homing Endonuclease I-Hmui also contains other interesting chemical elements:

Manganese (Mn) 1 atom

Strontium Binding Sites:

The binding sites of Strontium atom in the Dna Binding and Cleavage By the Hnh Homing Endonuclease I-Hmui (pdb code 1u3e). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 4 binding sites of Strontium where determined in the Dna Binding and Cleavage By the Hnh Homing Endonuclease I-Hmui, PDB code: 1u3e:
Jump to Strontium binding site number: 1; 2; 3; 4;

Strontium binding site 1 out of 4 in 1u3e

Go back to Strontium Binding Sites List in 1u3e
Strontium binding site 1 out of 4 in the Dna Binding and Cleavage By the Hnh Homing Endonuclease I-Hmui


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Dna Binding and Cleavage By the Hnh Homing Endonuclease I-Hmui within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr414

b:0.4
occ:1.00
O A:HOH424 3.1 73.6 1.0
O2 B:EDO403 3.5 83.5 1.0
C2 B:EDO403 4.0 78.6 1.0
O1 B:EDO403 4.0 73.3 1.0
C5' A:DC27 4.2 67.5 1.0
C4' A:DC27 4.2 66.9 1.0
O2 A:DT26 4.4 46.4 1.0
O4' A:DC27 4.6 66.9 1.0
O4' B:DT14 4.6 60.3 1.0
C1 B:EDO403 4.7 76.4 1.0
C4' B:DT14 4.7 59.1 1.0

Strontium binding site 2 out of 4 in 1u3e

Go back to Strontium Binding Sites List in 1u3e
Strontium binding site 2 out of 4 in the Dna Binding and Cleavage By the Hnh Homing Endonuclease I-Hmui


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Dna Binding and Cleavage By the Hnh Homing Endonuclease I-Hmui within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr415

b:0.5
occ:0.50
O B:HOH405 3.1 76.4 1.0
O A:HOH418 3.4 78.1 1.0
O6 A:DG36 4.3 0.2 1.0

Strontium binding site 3 out of 4 in 1u3e

Go back to Strontium Binding Sites List in 1u3e
Strontium binding site 3 out of 4 in the Dna Binding and Cleavage By the Hnh Homing Endonuclease I-Hmui


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of Dna Binding and Cleavage By the Hnh Homing Endonuclease I-Hmui within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Sr417

b:96.0
occ:1.00
O M:LYS118 2.8 47.1 1.0
O M:GLN120 3.0 48.2 1.0
O M:HOH425 3.2 77.3 1.0
SR M:SR418 3.2 0.4 1.0
C M:LYS118 3.7 43.1 1.0
C M:GLN120 4.2 47.7 1.0
CA M:LYS118 4.2 40.0 1.0
N M:GLN120 4.5 46.9 1.0
N M:ASN119 4.6 46.5 1.0
C M:ASN119 4.6 47.0 1.0
CA M:ASN119 4.8 46.3 1.0
CB M:LYS118 4.9 36.4 1.0
O M:ILE117 4.9 38.8 1.0
CA M:GLN120 4.9 47.5 1.0

Strontium binding site 4 out of 4 in 1u3e

Go back to Strontium Binding Sites List in 1u3e
Strontium binding site 4 out of 4 in the Dna Binding and Cleavage By the Hnh Homing Endonuclease I-Hmui


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 4 of Dna Binding and Cleavage By the Hnh Homing Endonuclease I-Hmui within 5.0Å range:
probe atom residue distance (Å) B Occ
M:Sr418

b:0.4
occ:1.00
O M:LYS118 2.8 47.1 1.0
O B:HOH404 3.1 67.6 1.0
SR M:SR417 3.2 96.0 1.0
OP1 B:DT18 3.8 45.7 1.0
C M:LYS118 4.0 43.1 1.0
O3' B:DC17 4.5 47.9 1.0
CA M:ASN119 4.6 46.3 1.0
N M:ASN119 4.8 46.5 1.0
P B:DT18 4.8 46.2 1.0
OD1 M:ASN119 4.9 44.4 1.0
CA M:LYS118 5.0 40.0 1.0
CB M:LYS118 5.0 36.4 1.0

Reference:

B.W.Shen, M.Landthaler, D.A.Shub, B.L.Stoddard. Dna Binding and Cleavage By the Hnh Homing Endonuclease I-Hmui. J.Mol.Biol. V. 342 43 2004.
ISSN: ISSN 0022-2836
PubMed: 15313606
DOI: 10.1016/J.JMB.2004.07.032
Page generated: Thu Oct 10 14:06:31 2024

Last articles

Ca in 5K7T
Ca in 5K7S
Ca in 5K31
Ca in 5K7R
Ca in 5K5T
Ca in 5K39
Ca in 5JY7
Ca in 5JYM
Ca in 5K21
Ca in 5K0H
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy