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Strontium in PDB 2hmp: Uncomplexed Actin Cleaved with Protease ECP32

Protein crystallography data

The structure of Uncomplexed Actin Cleaved with Protease ECP32, PDB code: 2hmp was solved by V.A.Klenchin, S.Y.Khaitlina, I.Rayment, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 63.900, 198.110, 69.560, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 21.5

Strontium Binding Sites:

The binding sites of Strontium atom in the Uncomplexed Actin Cleaved with Protease ECP32 (pdb code 2hmp). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 9 binding sites of Strontium where determined in the Uncomplexed Actin Cleaved with Protease ECP32, PDB code: 2hmp:
Jump to Strontium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Strontium binding site 1 out of 9 in 2hmp

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Strontium binding site 1 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr1391

b:15.5
occ:1.00
 O1B A:ATP5381 2.4 12.2 1.0
O A:HOH6609 2.5 16.7 1.0
O A:HOH6604 2.5 16.0 1.0
O A:HOH6607 2.5 11.2 1.0
O2G A:ATP5381 2.5 10.2 1.0
O A:HOH6610 2.6 12.7 1.0
O A:HOH6608 2.7 12.2 1.0
PG A:ATP5381 3.6 11.6 1.0
PB A:ATP5381 3.7 11.6 1.0
O3G A:ATP5381 3.9 11.1 1.0
O3B A:ATP5381 4.0 10.6 1.0
O A:HOH6617 4.2 15.4 1.0
CA A:GLY13 4.3 13.6 1.0
O3A A:ATP5381 4.4 9.8 1.0
O1A A:ATP5381 4.4 13.2 1.0
OE1 A:GLN137 4.4 17.8 1.0
O A:HOH6692 4.5 28.1 1.0
NZ A:LYS18 4.5 9.9 1.0
O A:HOH6943 4.5 40.6 1.0
OD2 A:ASP154 4.6 25.6 1.0
O A:HOH6657 4.6 19.4 1.0
OD1 A:ASP154 4.6 27.3 1.0
CD A:GLN137 4.6 16.6 1.0
OD2 A:ASP11 4.8 12.9 1.0
OD1 A:ASP11 4.8 11.0 1.0
PA A:ATP5381 4.9 12.8 1.0
O1G A:ATP5381 5.0 13.1 1.0
O2B A:ATP5381 5.0 11.2 1.0
CG A:ASP154 5.0 21.6 1.0

Strontium binding site 2 out of 9 in 2hmp

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Strontium binding site 2 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr2001

b:36.1
occ:0.70
 SR A:SR2001 0.0 36.1 0.7
O A:HOH6952 2.5 45.1 1.0
OD1 A:ASN128 2.5 28.6 1.0
SR A:SR2001 2.6 39.7 0.3
O A:GLU125 2.7 22.6 1.0
O A:HOH6951 2.8 48.5 1.0
O A:HOH6945 2.8 40.3 1.0
CG A:ASN128 3.5 22.6 1.0
ND2 A:ASN128 3.8 29.9 1.0
C A:GLU125 3.8 22.4 1.0
CA A:GLU125 4.3 21.6 1.0
O A:PHE124 4.6 19.1 1.0
O A:HOH6910 4.7 43.5 1.0
N A:THR126 4.9 20.8 1.0
CB A:ASN128 4.9 19.4 1.0

Strontium binding site 3 out of 9 in 2hmp

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Strontium binding site 3 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr2001

b:39.7
occ:0.30
 SR A:SR2001 0.0 39.7 0.3
SR A:SR2001 2.6 36.1 0.7
O A:GLU125 2.6 22.6 1.0
O A:HOH6910 2.8 43.5 1.0
O A:HOH6951 3.7 48.5 1.0
C A:GLU125 3.8 22.4 1.0
O A:HOH6952 4.3 45.1 1.0
CA A:THR126 4.3 22.2 1.0
N A:THR126 4.5 20.8 1.0
O A:THR126 4.6 21.4 1.0
OD1 A:ASN128 4.6 28.6 1.0
ND2 A:ASN128 4.8 29.9 1.0
CA A:GLU125 4.8 21.6 1.0
C A:THR126 4.9 22.1 1.0

Strontium binding site 4 out of 9 in 2hmp

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Strontium binding site 4 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 4 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr2002

b:42.4
occ:1.00
 O A:HOH6816 2.6 31.1 1.0
O A:HOH6837 2.7 34.5 1.0
O A:HOH6885 2.8 32.2 1.0
O A:HOH6896 2.8 35.2 1.0
O A:HOH6822 2.8 36.5 1.0
O A:HOH6917 2.9 43.1 1.0
O A:HOH6793 3.0 30.5 1.0
O A:HOH6649 4.2 21.3 1.0
O A:HOH6795 4.4 35.2 1.0
OE1 A:GLU224 4.5 39.1 1.0
OE2 A:GLU316 4.6 20.3 1.0
O A:HOH6877 4.6 35.9 1.0
O A:HOH6686 4.7 30.3 1.0
OE2 A:GLU224 4.9 43.1 1.0
OE1 A:GLU316 5.0 21.6 1.0

Strontium binding site 5 out of 9 in 2hmp

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Strontium binding site 5 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 5 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr1392

b:21.6
occ:1.00
 O B:HOH6640 2.4 20.6 1.0
O1B B:ATP5382 2.4 15.6 1.0
O B:HOH6619 2.5 17.5 1.0
O B:HOH6607 2.5 21.6 1.0
O2G B:ATP5382 2.5 16.7 1.0
O B:HOH6627 2.6 17.5 1.0
O B:HOH6626 2.7 18.9 1.0
PG B:ATP5382 3.6 17.3 1.0
PB B:ATP5382 3.7 15.3 1.0
O3G B:ATP5382 4.0 17.1 1.0
O3B B:ATP5382 4.0 14.3 1.0
O B:HOH6646 4.3 20.6 1.0
OE1 B:GLN137 4.3 23.1 1.0
CA B:GLY13 4.4 16.2 1.0
O1A B:ATP5382 4.4 14.8 1.0
O3A B:ATP5382 4.4 16.1 1.0
NZ B:LYS18 4.5 16.2 1.0
CD B:GLN137 4.5 19.6 1.0
O B:HOH6645 4.6 23.9 1.0
OD2 B:ASP154 4.7 25.7 1.0
OD1 B:ASP11 4.7 14.5 1.0
O B:HOH6632 4.8 24.2 1.0
OD2 B:ASP11 4.8 14.5 1.0
NE2 B:GLN137 4.8 13.8 1.0
PA B:ATP5382 4.9 18.3 1.0
OD1 B:ASP154 4.9 29.3 1.0
O1G B:ATP5382 5.0 17.1 1.0

Strontium binding site 6 out of 9 in 2hmp

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Strontium binding site 6 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 6 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr2003

b:26.5
occ:0.60
 SR B:SR2003 0.0 26.5 0.6
O B:HOH6807 2.3 48.9 1.0
O B:HOH6715 2.4 34.8 1.0
OD1 B:ASN128 2.6 24.1 0.5
O B:GLU125 2.7 20.1 1.0
O B:HOH6647 2.7 36.1 1.0
SR B:SR2003 2.7 26.3 0.4
O B:HOH6759 2.7 44.7 1.0
O B:HOH6719 3.0 31.4 1.0
CG B:ASN128 3.6 20.5 0.5
C B:GLU125 3.8 21.4 1.0
ND2 B:ASN128 4.1 25.5 0.5
O B:HOH6818 4.3 42.7 1.0
CA B:GLU125 4.3 20.6 1.0
O B:PHE124 4.7 18.7 1.0
O B:HOH6848 4.8 42.9 1.0
N B:THR126 4.9 19.7 1.0
CB B:ASN128 4.9 17.2 1.0
CG B:ASN128 4.9 18.3 0.5
O B:THR126 5.0 19.8 1.0

Strontium binding site 7 out of 9 in 2hmp

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Strontium binding site 7 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 7 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr2003

b:26.3
occ:0.40
 SR B:SR2003 0.0 26.3 0.4
O B:HOH6719 2.5 31.4 1.0
O B:HOH6807 2.5 48.9 1.0
O B:GLU125 2.7 20.1 1.0
SR B:SR2003 2.7 26.5 0.6
O B:HOH6647 3.3 36.1 1.0
O B:HOH6848 3.6 42.9 1.0
C B:GLU125 3.8 21.4 1.0
CA B:THR126 4.4 20.0 1.0
N B:THR126 4.5 19.7 1.0
O B:HOH6759 4.6 44.7 1.0
OD1 B:ASN128 4.6 24.1 0.5
O B:HOH6715 4.8 34.8 1.0
CA B:GLU125 4.8 20.6 1.0
O B:THR126 4.8 19.8 1.0
C B:THR126 5.0 19.3 1.0

Strontium binding site 8 out of 9 in 2hmp

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Strontium binding site 8 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 8 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr2004

b:50.9
occ:1.00
 O B:VAL30 2.5 16.2 1.0
O B:HOH6675 2.6 30.0 1.0
O B:HOH6793 2.7 47.5 1.0
O B:HOH6766 2.8 44.8 1.0
O B:HOH6685 2.8 35.2 1.0
C B:VAL30 3.7 17.9 1.0
O B:HOH6829 4.0 46.5 1.0
OD2 B:ASP56 4.0 44.7 1.0
N B:VAL30 4.3 18.1 1.0
CA B:VAL30 4.6 17.1 1.0
CB B:PHE31 4.6 17.6 1.0
CA B:PHE31 4.6 16.9 1.0
N B:PHE31 4.6 15.8 1.0
OD1 B:ASP56 4.8 42.6 1.0
CG B:ASP56 4.8 41.5 1.0
CB B:VAL30 4.9 17.1 1.0

Strontium binding site 9 out of 9 in 2hmp

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Strontium binding site 9 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 9 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr2005

b:50.1
occ:1.00
 O B:HOH6825 2.5 43.9 1.0
O B:HOH6824 2.6 33.0 1.0
O B:HOH6711 2.7 40.6 1.0
O B:HOH6778 3.2 50.1 1.0
O B:HOH6833 3.9 47.5 1.0
OE1 B:GLU83 4.5 28.9 1.0
OE2 B:GLU83 4.7 30.3 1.0
CD B:GLU83 4.8 30.4 1.0

Reference:

V.A.Klenchin, S.Y.Khaitlina, I.Rayment. Crystal Structure of Polymerization-Competent Actin J.Mol.Biol. V. 362 140 2006.
ISSN: ISSN 0022-2836
PubMed: 16893553
DOI: 10.1016/J.JMB.2006.07.001
Page generated: Thu Oct 10 21:22:11 2024

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