Atomistry » Strontium » PDB 2hdf-3i5a » 2hmp
Atomistry »
  Strontium »
    PDB 2hdf-3i5a »
      2hmp »

Strontium in PDB 2hmp: Uncomplexed Actin Cleaved with Protease ECP32

Protein crystallography data

The structure of Uncomplexed Actin Cleaved with Protease ECP32, PDB code: 2hmp was solved by V.A.Klenchin, S.Y.Khaitlina, I.Rayment, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 63.900, 198.110, 69.560, 90.00, 90.00, 90.00
R / Rfree (%) 17.8 / 21.5

Strontium Binding Sites:

The binding sites of Strontium atom in the Uncomplexed Actin Cleaved with Protease ECP32 (pdb code 2hmp). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 9 binding sites of Strontium where determined in the Uncomplexed Actin Cleaved with Protease ECP32, PDB code: 2hmp:
Jump to Strontium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9;

Strontium binding site 1 out of 9 in 2hmp

Go back to Strontium Binding Sites List in 2hmp
Strontium binding site 1 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr1391

b:15.5
occ:1.00
O1B A:ATP5381 2.4 12.2 1.0
O A:HOH6609 2.5 16.7 1.0
O A:HOH6604 2.5 16.0 1.0
O A:HOH6607 2.5 11.2 1.0
O2G A:ATP5381 2.5 10.2 1.0
O A:HOH6610 2.6 12.7 1.0
O A:HOH6608 2.7 12.2 1.0
PG A:ATP5381 3.6 11.6 1.0
PB A:ATP5381 3.7 11.6 1.0
O3G A:ATP5381 3.9 11.1 1.0
O3B A:ATP5381 4.0 10.6 1.0
O A:HOH6617 4.2 15.4 1.0
CA A:GLY13 4.3 13.6 1.0
O3A A:ATP5381 4.4 9.8 1.0
O1A A:ATP5381 4.4 13.2 1.0
OE1 A:GLN137 4.4 17.8 1.0
O A:HOH6692 4.5 28.1 1.0
NZ A:LYS18 4.5 9.9 1.0
O A:HOH6943 4.5 40.6 1.0
OD2 A:ASP154 4.6 25.6 1.0
O A:HOH6657 4.6 19.4 1.0
OD1 A:ASP154 4.6 27.3 1.0
CD A:GLN137 4.6 16.6 1.0
OD2 A:ASP11 4.8 12.9 1.0
OD1 A:ASP11 4.8 11.0 1.0
PA A:ATP5381 4.9 12.8 1.0
O1G A:ATP5381 5.0 13.1 1.0
O2B A:ATP5381 5.0 11.2 1.0
CG A:ASP154 5.0 21.6 1.0

Strontium binding site 2 out of 9 in 2hmp

Go back to Strontium Binding Sites List in 2hmp
Strontium binding site 2 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr2001

b:36.1
occ:0.70
SR A:SR2001 0.0 36.1 0.7
O A:HOH6952 2.5 45.1 1.0
OD1 A:ASN128 2.5 28.6 1.0
SR A:SR2001 2.6 39.7 0.3
O A:GLU125 2.7 22.6 1.0
O A:HOH6951 2.8 48.5 1.0
O A:HOH6945 2.8 40.3 1.0
CG A:ASN128 3.5 22.6 1.0
ND2 A:ASN128 3.8 29.9 1.0
C A:GLU125 3.8 22.4 1.0
CA A:GLU125 4.3 21.6 1.0
O A:PHE124 4.6 19.1 1.0
O A:HOH6910 4.7 43.5 1.0
N A:THR126 4.9 20.8 1.0
CB A:ASN128 4.9 19.4 1.0

Strontium binding site 3 out of 9 in 2hmp

Go back to Strontium Binding Sites List in 2hmp
Strontium binding site 3 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr2001

b:39.7
occ:0.30
SR A:SR2001 0.0 39.7 0.3
SR A:SR2001 2.6 36.1 0.7
O A:GLU125 2.6 22.6 1.0
O A:HOH6910 2.8 43.5 1.0
O A:HOH6951 3.7 48.5 1.0
C A:GLU125 3.8 22.4 1.0
O A:HOH6952 4.3 45.1 1.0
CA A:THR126 4.3 22.2 1.0
N A:THR126 4.5 20.8 1.0
O A:THR126 4.6 21.4 1.0
OD1 A:ASN128 4.6 28.6 1.0
ND2 A:ASN128 4.8 29.9 1.0
CA A:GLU125 4.8 21.6 1.0
C A:THR126 4.9 22.1 1.0

Strontium binding site 4 out of 9 in 2hmp

Go back to Strontium Binding Sites List in 2hmp
Strontium binding site 4 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 4 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr2002

b:42.4
occ:1.00
O A:HOH6816 2.6 31.1 1.0
O A:HOH6837 2.7 34.5 1.0
O A:HOH6885 2.8 32.2 1.0
O A:HOH6896 2.8 35.2 1.0
O A:HOH6822 2.8 36.5 1.0
O A:HOH6917 2.9 43.1 1.0
O A:HOH6793 3.0 30.5 1.0
O A:HOH6649 4.2 21.3 1.0
O A:HOH6795 4.4 35.2 1.0
OE1 A:GLU224 4.5 39.1 1.0
OE2 A:GLU316 4.6 20.3 1.0
O A:HOH6877 4.6 35.9 1.0
O A:HOH6686 4.7 30.3 1.0
OE2 A:GLU224 4.9 43.1 1.0
OE1 A:GLU316 5.0 21.6 1.0

Strontium binding site 5 out of 9 in 2hmp

Go back to Strontium Binding Sites List in 2hmp
Strontium binding site 5 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 5 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr1392

b:21.6
occ:1.00
O B:HOH6640 2.4 20.6 1.0
O1B B:ATP5382 2.4 15.6 1.0
O B:HOH6619 2.5 17.5 1.0
O B:HOH6607 2.5 21.6 1.0
O2G B:ATP5382 2.5 16.7 1.0
O B:HOH6627 2.6 17.5 1.0
O B:HOH6626 2.7 18.9 1.0
PG B:ATP5382 3.6 17.3 1.0
PB B:ATP5382 3.7 15.3 1.0
O3G B:ATP5382 4.0 17.1 1.0
O3B B:ATP5382 4.0 14.3 1.0
O B:HOH6646 4.3 20.6 1.0
OE1 B:GLN137 4.3 23.1 1.0
CA B:GLY13 4.4 16.2 1.0
O1A B:ATP5382 4.4 14.8 1.0
O3A B:ATP5382 4.4 16.1 1.0
NZ B:LYS18 4.5 16.2 1.0
CD B:GLN137 4.5 19.6 1.0
O B:HOH6645 4.6 23.9 1.0
OD2 B:ASP154 4.7 25.7 1.0
OD1 B:ASP11 4.7 14.5 1.0
O B:HOH6632 4.8 24.2 1.0
OD2 B:ASP11 4.8 14.5 1.0
NE2 B:GLN137 4.8 13.8 1.0
PA B:ATP5382 4.9 18.3 1.0
OD1 B:ASP154 4.9 29.3 1.0
O1G B:ATP5382 5.0 17.1 1.0

Strontium binding site 6 out of 9 in 2hmp

Go back to Strontium Binding Sites List in 2hmp
Strontium binding site 6 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 6 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr2003

b:26.5
occ:0.60
SR B:SR2003 0.0 26.5 0.6
O B:HOH6807 2.3 48.9 1.0
O B:HOH6715 2.4 34.8 1.0
OD1 B:ASN128 2.6 24.1 0.5
O B:GLU125 2.7 20.1 1.0
O B:HOH6647 2.7 36.1 1.0
SR B:SR2003 2.7 26.3 0.4
O B:HOH6759 2.7 44.7 1.0
O B:HOH6719 3.0 31.4 1.0
CG B:ASN128 3.6 20.5 0.5
C B:GLU125 3.8 21.4 1.0
ND2 B:ASN128 4.1 25.5 0.5
O B:HOH6818 4.3 42.7 1.0
CA B:GLU125 4.3 20.6 1.0
O B:PHE124 4.7 18.7 1.0
O B:HOH6848 4.8 42.9 1.0
N B:THR126 4.9 19.7 1.0
CB B:ASN128 4.9 17.2 1.0
CG B:ASN128 4.9 18.3 0.5
O B:THR126 5.0 19.8 1.0

Strontium binding site 7 out of 9 in 2hmp

Go back to Strontium Binding Sites List in 2hmp
Strontium binding site 7 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 7 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr2003

b:26.3
occ:0.40
SR B:SR2003 0.0 26.3 0.4
O B:HOH6719 2.5 31.4 1.0
O B:HOH6807 2.5 48.9 1.0
O B:GLU125 2.7 20.1 1.0
SR B:SR2003 2.7 26.5 0.6
O B:HOH6647 3.3 36.1 1.0
O B:HOH6848 3.6 42.9 1.0
C B:GLU125 3.8 21.4 1.0
CA B:THR126 4.4 20.0 1.0
N B:THR126 4.5 19.7 1.0
O B:HOH6759 4.6 44.7 1.0
OD1 B:ASN128 4.6 24.1 0.5
O B:HOH6715 4.8 34.8 1.0
CA B:GLU125 4.8 20.6 1.0
O B:THR126 4.8 19.8 1.0
C B:THR126 5.0 19.3 1.0

Strontium binding site 8 out of 9 in 2hmp

Go back to Strontium Binding Sites List in 2hmp
Strontium binding site 8 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 8 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr2004

b:50.9
occ:1.00
O B:VAL30 2.5 16.2 1.0
O B:HOH6675 2.6 30.0 1.0
O B:HOH6793 2.7 47.5 1.0
O B:HOH6766 2.8 44.8 1.0
O B:HOH6685 2.8 35.2 1.0
C B:VAL30 3.7 17.9 1.0
O B:HOH6829 4.0 46.5 1.0
OD2 B:ASP56 4.0 44.7 1.0
N B:VAL30 4.3 18.1 1.0
CA B:VAL30 4.6 17.1 1.0
CB B:PHE31 4.6 17.6 1.0
CA B:PHE31 4.6 16.9 1.0
N B:PHE31 4.6 15.8 1.0
OD1 B:ASP56 4.8 42.6 1.0
CG B:ASP56 4.8 41.5 1.0
CB B:VAL30 4.9 17.1 1.0

Strontium binding site 9 out of 9 in 2hmp

Go back to Strontium Binding Sites List in 2hmp
Strontium binding site 9 out of 9 in the Uncomplexed Actin Cleaved with Protease ECP32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 9 of Uncomplexed Actin Cleaved with Protease ECP32 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr2005

b:50.1
occ:1.00
O B:HOH6825 2.5 43.9 1.0
O B:HOH6824 2.6 33.0 1.0
O B:HOH6711 2.7 40.6 1.0
O B:HOH6778 3.2 50.1 1.0
O B:HOH6833 3.9 47.5 1.0
OE1 B:GLU83 4.5 28.9 1.0
OE2 B:GLU83 4.7 30.3 1.0
CD B:GLU83 4.8 30.4 1.0

Reference:

V.A.Klenchin, S.Y.Khaitlina, I.Rayment. Crystal Structure of Polymerization-Competent Actin J.Mol.Biol. V. 362 140 2006.
ISSN: ISSN 0022-2836
PubMed: 16893553
DOI: 10.1016/J.JMB.2006.07.001
Page generated: Wed Dec 16 02:16:12 2020

Last articles

Zn in 7L0B
Zn in 7KZZ
Zn in 7KZL
Zn in 7L3O
Zn in 7L52
Zn in 7L6T
Zn in 7KZ7
Zn in 7L6R
Zn in 7KKM
Zn in 7KKQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy