Strontium in the structure of Crystal Structure of Wild Type Rhodobacter Sphaeroides With Stigmatellin and Antimycin Inhibited (pdb 2qjp)

The binding sites of Strontium atom in the structure of Crystal Structure of Wild Type Rhodobacter Sphaeroides With Stigmatellin and Antimycin Inhibited (pdb code 2qjp). This binding sites where shown with 5.0 Angstroms radius around Strontium atom. The 2qjp structure was solved by L.ESSER, D.XIA, with X-Ray Crystallography technique, brief refinement statistics is given in the table below: Resolution (A) 18.0-2.6 Space group P1211 a (A) 135.061 b (A) 146.520 c (A) 141.003 alpha (°) 90.00 beta (°) 110.21 gamma (°) 90.00 Rfactor (%) 24.4 Rfree (%) 27.7 Strontium Binding Sites: Strontium binding site 1 out of 6 in 2qjp Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Strontium in the PDB 2qjp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Asp8, B: Val9, B: Pro10, B: Phe11, B: Glu14, B: Glu129, conact list: Atom Atom Distance (A) Sr OD2 B:Asp8 4.24 Sr C B:Asp8 4.69 Sr OD1 B:Asp8 3.14 Sr CG B:Asp8 3.94 Sr O B:Val9 2.52 Sr N B:Val9 4.32 Sr C B:Val9 3.55 Sr CA B:Val9 4.60 Sr N B:Pro10 4.21 Sr C B:Pro10 4.86 Sr CA B:Pro10 4.07 Sr N B:Phe11 4.57 Sr OE1 B:Glu14 2.91 Sr OE2 B:Glu14 2.37 Sr CD B:Glu14 2.93 Sr CG B:Glu14 4.35 Sr OE1 B:Glu129 4.89 Sr OE2 B:Glu129 2.93 Sr CD B:Glu129 3.91 Sr CG B:Glu129 4.36 interactive model: Strontium binding site 2 out of 6 in 2qjp Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Strontium in the PDB 2qjp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: E: Asp8, E: Val9, E: Pro10, E: Phe11, E: Glu14, E: Phe110, E: Glu129, conact list: Atom Atom Distance (A) Sr CB E:Asp8 4.90 Sr OD2 E:Asp8 3.82 Sr C E:Asp8 4.61 Sr OD1 E:Asp8 3.23 Sr CG E:Asp8 3.73 Sr CA E:Asp8 4.87 Sr O E:Val9 2.69 Sr N E:Val9 4.28 Sr C E:Val9 3.72 Sr CA E:Val9 4.66 Sr N E:Pro10 4.47 Sr CA E:Pro10 4.40 Sr N E:Phe11 4.88 Sr OE1 E:Glu14 2.61 Sr OE2 E:Glu14 3.14 Sr CD E:Glu14 3.15 Sr CG E:Glu14 4.49 Sr CE2 E:Phe110 4.94 Sr CZ E:Phe110 4.69 Sr OE2 E:Glu129 3.42 Sr CD E:Glu129 4.10 Sr CG E:Glu129 4.08 interactive model: Strontium binding site 3 out of 6 in 2qjp Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Strontium in the PDB 2qjp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: D: Gln316, G: Asp311, G: Trp313, conact list: Atom Atom Distance (A) Sr NE2 D:Gln316 4.78 Sr O G:Asp311 4.83 Sr CB G:Asp311 5.00 Sr NE1 G:Trp313 4.81 interactive model: Strontium binding site 4 out of 6 in 2qjp Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 4 of Strontium in the PDB 2qjp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: H: Asp8, H: Val9, H: Pro10, H: Phe11, H: Glu14, H: Phe110, H: Glu129, conact list: Atom Atom Distance (A) Sr OD2 H:Asp8 4.24 Sr C H:Asp8 4.73 Sr OD1 H:Asp8 3.05 Sr CG H:Asp8 3.91 Sr O H:Val9 2.65 Sr N H:Val9 4.36 Sr C H:Val9 3.71 Sr CA H:Val9 4.69 Sr N H:Pro10 4.42 Sr CA H:Pro10 4.31 Sr N H:Phe11 4.74 Sr OE1 H:Glu14 2.32 Sr OE2 H:Glu14 3.29 Sr CD H:Glu14 3.15 Sr CG H:Glu14 4.56 Sr CE2 H:Phe110 4.78 Sr CZ H:Phe110 4.62 Sr OE1 H:Glu129 4.79 Sr OE2 H:Glu129 2.72 Sr CD H:Glu129 3.74 Sr CG H:Glu129 4.17 interactive model: Strontium binding site 5 out of 6 in 2qjp Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 5 of Strontium in the PDB 2qjp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: J: Asp311, J: Gln316, conact list: Atom Atom Distance (A) Sr O J:Asp311 3.46 Sr C J:Asp311 4.64 Sr OE1 J:Gln316 4.84 interactive model: Strontium binding site 6 out of 6 in 2qjp Click to enlarge Click to enlarge Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 6 of Strontium in the PDB 2qjp. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: K: Asp8, K: Val9, K: Pro10, K: Glu14, K: Phe110, K: Glu129, conact list: Atom Atom Distance (A) Sr CB K:Asp8 4.92 Sr OD2 K:Asp8 3.61 Sr C K:Asp8 4.78 Sr OD1 K:Asp8 3.13 Sr CG K:Asp8 3.64 Sr O K:Val9 2.94 Sr N K:Val9 4.54 Sr C K:Val9 3.91 Sr CA K:Val9 4.91 Sr N K:Pro10 4.53 Sr CA K:Pro10 4.36 Sr OE1 K:Glu14 2.54 Sr OE2 K:Glu14 3.65 Sr CD K:Glu14 3.30 Sr CG K:Glu14 4.43 Sr CE2 K:Phe110 4.93 Sr CZ K:Phe110 4.67 Sr OE2 K:Glu129 3.03 Sr CD K:Glu129 4.05 Sr CG K:Glu129 4.53 interactive model: