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Strontium in PDB 3goo: Strontium Bound to the Holliday Junction Sequence D(Tcggcgccga)4

Protein crystallography data

The structure of Strontium Bound to the Holliday Junction Sequence D(Tcggcgccga)4, PDB code: 3goo was solved by A.Naseer, C.J.Cardin, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 16.20 / 2.50
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 65.110, 24.274, 37.064, 90.00, 110.19, 90.00
R / Rfree (%) 22 / 30

Strontium Binding Sites:

The binding sites of Strontium atom in the Strontium Bound to the Holliday Junction Sequence D(Tcggcgccga)4 (pdb code 3goo). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 3 binding sites of Strontium where determined in the Strontium Bound to the Holliday Junction Sequence D(Tcggcgccga)4, PDB code: 3goo:
Jump to Strontium binding site number: 1; 2; 3;

Strontium binding site 1 out of 3 in 3goo

Go back to Strontium Binding Sites List in 3goo
Strontium binding site 1 out of 3 in the Strontium Bound to the Holliday Junction Sequence D(Tcggcgccga)4


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Strontium Bound to the Holliday Junction Sequence D(Tcggcgccga)4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr23

b:45.9
occ:1.00
O A:HOH72 2.3 20.6 1.0
O A:HOH54 2.8 25.8 1.0
O B:HOH39 3.3 17.6 1.0
N7 A:DG6 4.9 11.0 1.0

Strontium binding site 2 out of 3 in 3goo

Go back to Strontium Binding Sites List in 3goo
Strontium binding site 2 out of 3 in the Strontium Bound to the Holliday Junction Sequence D(Tcggcgccga)4


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Strontium Bound to the Holliday Junction Sequence D(Tcggcgccga)4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr21

b:48.8
occ:1.00
O B:HOH52 2.5 15.4 1.0
O B:HOH61 4.1 10.8 1.0
N2 B:DG13 4.3 11.8 1.0
O4' B:DC15 4.7 10.2 1.0
N2 B:DG14 4.7 10.5 1.0

Strontium binding site 3 out of 3 in 3goo

Go back to Strontium Binding Sites List in 3goo
Strontium binding site 3 out of 3 in the Strontium Bound to the Holliday Junction Sequence D(Tcggcgccga)4


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of Strontium Bound to the Holliday Junction Sequence D(Tcggcgccga)4 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr22

b:45.0
occ:1.00
O B:HOH58 2.8 12.6 1.0
O2 B:DC12 4.4 13.1 1.0
O4' B:DC12 4.8 15.5 1.0
O4' B:DG13 5.0 13.0 1.0

Reference:

A.Naseer, C.J.Cardin. Strontium Bound to the Holliday Junction Sequence D(Tcggcgccga)4 To Be Published.
Page generated: Wed Dec 16 02:21:48 2020

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