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Strontium in PDB 3ow2: Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit

Protein crystallography data

The structure of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit, PDB code: 3ow2 was solved by Z.F.Kanyo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.70
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 211.853, 298.000, 574.985, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Other elements in 3ow2:

The structure of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit also contains other interesting chemical elements:

Fluorine (F) 1 atom
Magnesium (Mg) 61 atoms
Potassium (K) 1 atom
Cadmium (Cd) 4 atoms
Chlorine (Cl) 13 atoms
Sodium (Na) 26 atoms

Strontium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 60; Page 7, Binding sites: 61 - 70; Page 8, Binding sites: 71 - 80; Page 9, Binding sites: 81 - 90; Page 10, Binding sites: 91 - 98;

Binding sites:

The binding sites of Strontium atom in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit (pdb code 3ow2). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 98 binding sites of Strontium where determined in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit, PDB code: 3ow2:
Jump to Strontium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Strontium binding site 1 out of 98 in 3ow2

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Strontium binding site 1 out of 98 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Sr8081

b:91.7
occ:1.00
N7 0:G854 2.7 27.9 1.0
N7 0:G824 2.8 35.6 1.0
C8 0:G854 3.4 28.0 1.0
C8 0:G824 3.5 34.1 1.0
OP2 0:G854 3.6 34.7 1.0
OP2 0:U823 3.7 34.6 1.0
OP2 0:G824 3.9 35.0 1.0
C5 0:G854 4.0 26.0 1.0
C5 0:G824 4.0 31.7 1.0
OP2 0:C853 4.1 29.1 1.0
O6 0:G854 4.3 26.0 1.0
O6 0:G824 4.4 31.4 1.0
C6 0:G854 4.6 25.8 1.0
C6 0:G824 4.6 31.7 1.0
O5' 0:C853 4.7 30.1 1.0
C5 0:U823 4.7 27.3 1.0
N9 0:G854 4.7 26.9 1.0
N9 0:G824 4.8 31.7 1.0
O5' 0:U823 4.8 32.0 1.0
P 0:U823 4.8 33.0 1.0
P 0:G854 4.9 31.9 1.0
O5' 0:G854 4.9 32.1 1.0
C6 0:U823 4.9 28.6 1.0
P 0:C853 4.9 29.7 1.0

Strontium binding site 2 out of 98 in 3ow2

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Strontium binding site 2 out of 98 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Sr8082

b:64.5
occ:1.00
O6 0:G1491 2.5 49.2 1.0
OP2 0:G1489 2.7 42.1 1.0
C6 0:G1491 3.6 46.2 1.0
P 0:G1489 3.9 40.1 1.0
OP2 0:A1487 4.1 38.1 1.0
OP1 0:G1489 4.2 40.4 1.0
N1 0:G1491 4.5 43.4 1.0
C5 0:G1491 4.5 44.6 1.0
N7 0:G1491 4.7 45.9 1.0
OP2 0:G1490 4.7 34.2 1.0
OP1 0:G1453 4.9 39.1 1.0
O5' 0:G1489 4.9 37.6 1.0
N7 0:G1490 4.9 30.0 1.0
O3' 0:U1488 5.0 43.2 1.0

Strontium binding site 3 out of 98 in 3ow2

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Strontium binding site 3 out of 98 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Sr8083

b:46.5
occ:1.00
OP1 0:G1354 2.7 28.6 1.0
OP2 0:A643 2.9 27.4 1.0
OP1 0:C1353 3.5 29.6 1.0
OP1 0:A643 3.7 26.0 1.0
P 0:G1354 3.7 22.5 1.0
P 0:A643 3.8 24.4 1.0
O3' 0:C1353 3.8 26.2 1.0
O5' 0:C1353 4.1 35.8 1.0
O4 0:U904 4.4 29.7 1.0
P 0:C1353 4.5 38.2 1.0
OP2 0:G642 4.5 25.5 1.0
OP1 0:G642 4.5 27.8 1.0
N3 0:U904 4.5 27.9 1.0
OP2 0:G1354 4.6 21.6 1.0
O2' 0:A1352 4.7 39.9 1.0
O5' 0:A643 4.7 22.8 1.0
N1 0:A1355 4.7 29.5 1.0
C5' 0:C1353 4.7 29.7 1.0
C3' 0:C1353 4.7 26.9 1.0
O5' 0:G642 4.8 26.9 1.0
P 0:G642 4.8 25.9 1.0
O5' 0:G1354 4.9 23.5 1.0
N6 0:A1355 5.0 26.4 1.0
C4 0:U904 5.0 28.4 1.0

Strontium binding site 4 out of 98 in 3ow2

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Strontium binding site 4 out of 98 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 4 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Sr8084

b:49.1
occ:1.00
OP1 0:A1755 2.8 29.0 1.0
O3' 0:A1754 3.6 28.5 1.0
P 0:A1755 3.8 24.4 1.0
OP1 0:C1738 4.6 26.9 1.0
C5' 0:A1755 4.7 27.8 1.0
OP2 0:C1738 4.8 27.3 1.0
N2 0:G834 4.8 25.0 1.0
O2' 0:G834 4.8 26.4 1.0
O5' 0:A1755 4.8 27.7 1.0
OP2 0:A1755 4.9 25.6 1.0
C3' 0:A1754 5.0 28.0 1.0

Strontium binding site 5 out of 98 in 3ow2

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Strontium binding site 5 out of 98 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 5 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Sr8085

b:50.4
occ:1.00
O2 0:C893 2.8 31.8 1.0
O2' 0:C893 2.9 31.9 1.0
C2 0:C893 3.9 26.6 1.0
C2' 0:C893 4.0 26.9 1.0
C1' 0:C893 4.0 27.2 1.0
O3' 0:C893 4.3 28.2 1.0
N1 0:C893 4.5 26.1 1.0
N7 0:G892 4.6 15.4 1.0
OP2 0:A895 4.6 24.4 1.0
OP2 0:G892 4.7 23.1 1.0
C3' 0:C893 4.8 26.6 1.0
NZ Z:LYS53 5.0 25.1 1.0
N3 0:C893 5.0 27.8 1.0

Strontium binding site 6 out of 98 in 3ow2

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Strontium binding site 6 out of 98 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 6 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Sr8086

b:46.3
occ:1.00
O H:SER10 2.6 31.7 1.0
O6 0:G1055 2.9 36.9 1.0
C H:SER10 3.8 30.9 1.0
C6 0:G1055 3.9 30.9 1.0
CB H:SER10 4.4 31.7 1.0
N7 0:G1055 4.4 30.1 1.0
CG H:LYS11 4.4 27.6 1.0
OP2 0:G1054 4.6 29.1 1.0
C5 0:G1055 4.6 30.5 1.0
CA H:SER10 4.6 31.6 1.0
NZ H:LYS11 4.6 29.3 1.0
N7 0:G1054 4.6 34.3 1.0
N H:LYS11 4.7 29.2 1.0
CA H:LYS11 4.7 27.6 1.0
OG H:SER10 4.7 29.4 1.0
OP2 0:G1053 5.0 29.9 1.0

Strontium binding site 7 out of 98 in 3ow2

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Strontium binding site 7 out of 98 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 7 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Sr8087

b:77.1
occ:1.00
OP1 0:G147 3.0 33.9 1.0
OP1 0:A183 3.0 33.7 1.0
CD1 L:LEU157 3.0 36.5 1.0
O3' 0:U146 3.4 31.3 1.0
O3' 0:G182 3.5 33.0 1.0
CG L:LEU157 3.7 36.6 1.0
CD2 L:LEU157 3.7 36.3 1.0
P 0:G147 3.8 30.6 1.0
P 0:A183 3.9 31.8 1.0
C5' 0:G147 4.2 28.4 1.0
O5' 0:G147 4.5 30.6 1.0
O2' 0:U146 4.6 30.2 1.0
C3' 0:U146 4.7 32.4 1.0
C3' 0:G182 4.7 33.4 1.0
C5' 0:G182 4.7 34.7 1.0
C4' 0:G182 4.9 34.8 1.0
OP2 0:A183 4.9 33.8 1.0
O5' 0:A183 5.0 31.8 1.0
C5' 0:A183 5.0 31.9 1.0
C4' 0:U146 5.0 33.2 1.0

Strontium binding site 8 out of 98 in 3ow2

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Strontium binding site 8 out of 98 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 8 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Sr8088

b:62.1
occ:1.00
OP2 0:A1747 2.6 27.8 1.0
OP1 0:G2585 2.6 29.0 1.0
O4 0:U1749 2.7 43.0 1.0
OP2 0:U1748 2.7 30.0 1.0
C4 0:U1749 3.6 37.0 1.0
P 0:G2585 3.7 25.7 1.0
OP2 0:G2585 3.8 27.0 1.0
C5 0:U1749 3.9 38.4 1.0
P 0:A1747 4.0 25.3 1.0
P 0:U1748 4.0 24.9 1.0
OP2 0:U2586 4.3 31.2 1.0
SR 0:SR8145 4.5 0.3 1.0
OP1 0:U2586 4.5 28.9 1.0
C5' 0:A1747 4.5 27.4 1.0
O5' 0:A1747 4.5 28.0 1.0
OP1 0:U1748 4.6 30.6 1.0
O5' 0:G2585 4.7 25.3 1.0
O3' 0:G2584 4.8 27.2 1.0
P 0:U2586 4.8 28.8 1.0
N3 0:U1749 4.8 32.9 1.0
OP1 0:G1751 4.8 26.3 1.0
O3' 0:A1746 4.9 24.2 1.0
O3' 0:A1747 4.9 26.8 1.0
OP1 0:A1747 4.9 25.1 1.0
C5' 0:G2585 5.0 26.2 1.0
C5 0:U1748 5.0 31.9 1.0

Strontium binding site 9 out of 98 in 3ow2

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Strontium binding site 9 out of 98 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 9 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Sr8089

b:69.1
occ:1.00
OP2 0:A86 2.8 52.0 1.0
OP1 0:C85 2.8 45.9 1.0
OP1 0:C87 2.9 61.7 1.0
OD1 S:ASP68 3.0 58.7 1.0
OD2 S:ASP68 3.1 59.1 1.0
CG S:ASP68 3.5 55.6 1.0
P 0:A86 4.0 49.3 1.0
P 0:C85 4.2 43.0 1.0
SR 0:SR8111 4.3 75.7 1.0
P 0:C87 4.4 62.3 1.0
OP1 0:A86 4.4 50.5 1.0
C3' 0:A86 4.4 54.2 1.0
C5' 0:C85 4.6 42.5 1.0
O5' 0:C85 4.6 42.9 1.0
C5' 0:A86 4.8 51.9 1.0
O5' 0:A86 4.8 50.0 1.0
O3' 0:A86 4.9 59.1 1.0
CB S:ASP68 5.0 50.8 1.0
OP2 0:C85 5.0 43.4 1.0

Strontium binding site 10 out of 98 in 3ow2

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Strontium binding site 10 out of 98 in the Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 10 of Crystal Structure of Enhanced Macrolide Bound to 50S Ribosomal Subunit within 5.0Å range:
probe atom residue distance (Å) B Occ
0:Sr8090

b:72.9
occ:1.00
O6 0:G765 4.6 25.2 1.0
N7 0:G765 4.6 21.3 1.0
N7 0:A897 4.7 23.3 1.0
OP2 0:A897 4.7 24.6 1.0
OP1 0:A761 4.8 28.4 1.0
OP2 0:C896 4.9 19.5 1.0

Reference:

Z.F.Kanyo, N/A. N/A N/A.
Page generated: Wed Dec 16 02:24:01 2020

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