Strontium in the structure of Alternatingly Modified 2'Fluoro Rna Octamer F/RA2U2-R32 (pdb 3p4c)
The binding sites of Strontium atom in the structure of Alternatingly Modified 2'Fluoro Rna Octamer F/RA2U2-R32 (pdb code 3p4c). This binding sites where shown with 5.0 Angstroms radius around Strontium atom. The 3p4c structure was solved by P.S.PALLAN, E.M.GREENE, P.A.JICMAN, R.K.PANDEY, M.MANOHARAN, E.ROZNERS, M.EGLI, with X-Ray Crystallography technique, brief refinement statistics is given in the table below:
Resolution (A) | 50.0-1.1 | Space group | H32 | a (A) | 40.550 | b (A) | 40.550 | c (A) | 117.222 | alpha (°) | 90.00 | beta (°) | 90.00 | gamma (°) | 120.00 | Rfactor (%) | 18.2 | Rfree (%) | 24.9 |
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Strontium Binding Sites:Strontium binding site 1 out of 3 in 3p4c
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 1 of Strontium in the PDB 3p4c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Cfz209, B: G210, A: Hoh327, B: Hoh323, | conact list:
Atom | Atom | Distance (A) | Sr | C3' B:Cfz209 | 4.01 | Sr | O3' B:Cfz209 | 4.18 | Sr | C5' B:Cfz209 | 3.44 | Sr | C4' B:Cfz209 | 4.28 | Sr | O5' B:Cfz209 | 2.20 | Sr | OP1 B:G210 | 4.56 | Sr | P B:G210 | 3.77 | Sr | OP2 B:G210 | 2.45 | Sr | O5' B:G210 | 4.87 | Sr | O A:Hoh327 | 4.78 | Sr | O B:Hoh323 | 3.44 |
| interactive model:
| Strontium binding site 2 out of 3 in 3p4c
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 2 of Strontium in the PDB 3p4c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: A: Af2103, A: A104, B: A212, B: Uft213, B: U214, A: Hoh310, A: Hoh334, A: Hoh337, A: Hoh355, A: Hoh372, A: Hoh380, B: Hoh308, B: Hoh336, B: Hoh341, B: Hoh352, B: Hoh373, B: Hoh375, B: Hoh384, B: Hoh388, | conact list:
Atom | Atom | Distance (A) | Sr | N6 A:Af2103 | 4.64 | Sr | N6 A:A104 | 4.51 | Sr | N6 B:A212 | 4.62 | Sr | N7 B:A212 | 4.61 | Sr | N3 B:Uft213 | 4.93 | Sr | C5 B:Uft213 | 4.28 | Sr | C4 B:Uft213 | 3.74 | Sr | O4 B:Uft213 | 2.67 | Sr | O4 B:U214 | 4.57 | Sr | O A:Hoh310 | 2.46 | Sr | O A:Hoh334 | 2.44 | Sr | O A:Hoh337 | 3.53 | Sr | O A:Hoh355 | 1.80 | Sr | O A:Hoh372 | 2.83 | Sr | O A:Hoh380 | 4.47 | Sr | O B:Hoh308 | 2.92 | Sr | O B:Hoh336 | 2.43 | Sr | O B:Hoh341 | 4.63 | Sr | O B:Hoh352 | 2.75 | Sr | O B:Hoh373 | 4.60 | Sr | O B:Hoh375 | 2.39 | Sr | O B:Hoh384 | 4.35 | Sr | O B:Hoh388 | 4.29 |
| interactive model:
| Strontium binding site 3 out of 3 in 3p4c
|  Click to enlarge |  Click to enlarge | Mono- and Stereo- picture of 5.0 Angstrom coordination sphere 3 of Strontium in the PDB 3p4c. Coordination sphere was calculated for all residues within 5.0 Angstroms distance from the central Strontium atom, shown by VdW sphere Residues shown as a stick model or VDW spheres: B: Uft213, A: Hoh338, B: Hoh342, B: Hoh345, B: Hoh378, B: Hoh386, B: Hoh390, | conact list:
Atom | Atom | Distance (A) | Sr | O4' B:Uft213 | 4.84 | Sr | F2' B:Uft213 | 4.69 | Sr | O A:Hoh338 | 4.30 | Sr | O B:Hoh342 | 3.82 | Sr | O B:Hoh345 | 4.77 | Sr | O B:Hoh378 | 2.13 | Sr | O B:Hoh386 | 3.95 | Sr | O B:Hoh390 | 3.79 |
| interactive model:
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