Atomistry » Strontium » PDB 3ilg-4rne » 3p4c
Atomistry »
  Strontium »
    PDB 3ilg-4rne »
      3p4c »

Strontium in PDB 3p4c: Alternatingly Modified 2'Fluoro Rna Octamer F/RA2U2-R32

Protein crystallography data

The structure of Alternatingly Modified 2'Fluoro Rna Octamer F/RA2U2-R32, PDB code: 3p4c was solved by P.S.Pallan, E.M.Greene, P.A.Jicman, R.K.Pandey, M.Manoharan, E.Rozners, M.Egli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.15
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 40.550, 40.550, 117.222, 90.00, 90.00, 120.00
R / Rfree (%) 18.2 / 24.9

Other elements in 3p4c:

The structure of Alternatingly Modified 2'Fluoro Rna Octamer F/RA2U2-R32 also contains other interesting chemical elements:

Fluorine (F) 8 atoms

Strontium Binding Sites:

The binding sites of Strontium atom in the Alternatingly Modified 2'Fluoro Rna Octamer F/RA2U2-R32 (pdb code 3p4c). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 3 binding sites of Strontium where determined in the Alternatingly Modified 2'Fluoro Rna Octamer F/RA2U2-R32, PDB code: 3p4c:
Jump to Strontium binding site number: 1; 2; 3;

Strontium binding site 1 out of 3 in 3p4c

Go back to Strontium Binding Sites List in 3p4c
Strontium binding site 1 out of 3 in the Alternatingly Modified 2'Fluoro Rna Octamer F/RA2U2-R32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Alternatingly Modified 2'Fluoro Rna Octamer F/RA2U2-R32 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr301

b:19.5
occ:1.00
O5' B:CFZ209 2.2 17.7 0.8
OP2 B:G210 2.5 20.0 1.0
C5' B:CFZ209 3.4 20.8 0.8
O B:HOH323 3.4 38.7 1.0
P B:G210 3.8 16.4 1.0
C3' B:CFZ209 4.0 16.0 0.8
O3' B:CFZ209 4.2 20.6 0.8
C4' B:CFZ209 4.3 17.1 0.8
OP1 B:G210 4.6 26.0 1.0
O A:HOH327 4.8 27.1 1.0
O5' B:G210 4.9 18.9 1.0

Strontium binding site 2 out of 3 in 3p4c

Go back to Strontium Binding Sites List in 3p4c
Strontium binding site 2 out of 3 in the Alternatingly Modified 2'Fluoro Rna Octamer F/RA2U2-R32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Alternatingly Modified 2'Fluoro Rna Octamer F/RA2U2-R32 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr302

b:27.1
occ:1.00
O A:HOH355 1.8 17.5 0.7
O B:HOH375 2.4 25.2 1.0
O B:HOH336 2.4 26.2 1.0
O A:HOH334 2.4 21.6 1.0
O A:HOH310 2.5 23.4 1.0
O4 B:UFT213 2.7 15.7 1.0
O B:HOH352 2.8 31.3 1.0
O A:HOH372 2.8 41.8 1.0
O B:HOH308 2.9 15.1 0.5
O A:HOH337 3.5 23.8 1.0
C4 B:UFT213 3.7 14.2 1.0
C5 B:UFT213 4.3 14.0 1.0
O B:HOH388 4.3 28.9 1.0
O B:HOH384 4.4 54.3 1.0
O A:HOH380 4.5 49.4 1.0
N6 A:A104 4.5 13.3 1.0
O4 B:U214 4.6 10.8 1.0
O B:HOH373 4.6 22.8 1.0
N7 B:A212 4.6 11.7 1.0
N6 B:A212 4.6 12.8 1.0
O B:HOH341 4.6 38.5 1.0
N6 A:AF2103 4.6 9.8 1.0
N3 B:UFT213 4.9 12.3 1.0

Strontium binding site 3 out of 3 in 3p4c

Go back to Strontium Binding Sites List in 3p4c
Strontium binding site 3 out of 3 in the Alternatingly Modified 2'Fluoro Rna Octamer F/RA2U2-R32


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of Alternatingly Modified 2'Fluoro Rna Octamer F/RA2U2-R32 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr303

b:77.1
occ:0.33
O B:HOH378 2.1 16.7 0.6
O B:HOH390 3.8 59.7 1.0
O B:HOH342 3.8 24.0 1.0
O B:HOH386 3.9 41.2 1.0
O A:HOH338 4.3 20.7 1.0
F2' B:UFT213 4.7 12.3 1.0
O B:HOH345 4.8 16.0 1.0
O4' B:UFT213 4.8 13.4 1.0

Reference:

P.S.Pallan, E.M.Greene, P.A.Jicman, R.K.Pandey, M.Manoharan, E.Rozners, M.Egli. Unexpected Origins of the Enhanced Pairing Affinity of 2'-Fluoro-Modified Rna. Nucleic Acids Res. V. 39 3482 2011.
ISSN: ISSN 0305-1048
PubMed: 21183463
DOI: 10.1093/NAR/GKQ1270
Page generated: Wed Dec 16 02:23:51 2020

Last articles

Zn in 7L0B
Zn in 7KZZ
Zn in 7KZL
Zn in 7L3O
Zn in 7L52
Zn in 7L6T
Zn in 7KZ7
Zn in 7L6R
Zn in 7KKM
Zn in 7KKQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy