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Strontium in PDB 3sd8: Crystal Structure of Ara-Fhna Decamer Dna

Protein crystallography data

The structure of Crystal Structure of Ara-Fhna Decamer Dna, PDB code: 3sd8 was solved by M.Egli, P.S.Pallan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.30 / 1.67
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 28.003, 42.855, 45.833, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 23.8

Other elements in 3sd8:

The structure of Crystal Structure of Ara-Fhna Decamer Dna also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Strontium Binding Sites:

The binding sites of Strontium atom in the Crystal Structure of Ara-Fhna Decamer Dna (pdb code 3sd8). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total only one binding site of Strontium was determined in the Crystal Structure of Ara-Fhna Decamer Dna, PDB code: 3sd8:

Strontium binding site 1 out of 1 in 3sd8

Go back to Strontium Binding Sites List in 3sd8
Strontium binding site 1 out of 1 in the Crystal Structure of Ara-Fhna Decamer Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Crystal Structure of Ara-Fhna Decamer Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr1

b:44.0
occ:1.00
O A:HOH20 2.6 37.5 1.0
O B:HOH7 4.4 24.1 1.0
N6 A:DA105 4.7 23.1 1.0
O B:HOH6 4.7 38.5 1.0
O6 A:DG103 4.7 23.9 1.0
O B:HOH9 4.7 25.2 1.0
O4 B:F4H206 4.8 24.8 1.0
N7 A:DG103 4.8 22.8 1.0
O4 A:DT104 5.0 20.4 1.0

Reference:

M.Egli, P.S.Pallan, C.R.Allerson, T.P.Prakash, A.Berdeja, J.Yu, B.Bhat, E.E.Swayze, P.Seth. Structural Origins of Opposite Effects on Stability By Axial and Equatorial 3'-Fluoro Modifications of Hexitol Nucleic Acid (Hna) To Be Published.
Page generated: Wed Dec 16 02:23:51 2020

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