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Strontium in PDB 3v06: Crystal Structure of S-6'-Me-3'-Fluoro Hexitol Nucleic Acid

Protein crystallography data

The structure of Crystal Structure of S-6'-Me-3'-Fluoro Hexitol Nucleic Acid, PDB code: 3v06 was solved by P.S.Pallan, M.Egli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 32.45 / 1.53
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 24.879, 45.222, 46.598, 90.00, 90.00, 90.00
R / Rfree (%) 16.7 / 22.7

Other elements in 3v06:

The structure of Crystal Structure of S-6'-Me-3'-Fluoro Hexitol Nucleic Acid also contains other interesting chemical elements:

Fluorine (F) 2 atoms

Strontium Binding Sites:

The binding sites of Strontium atom in the Crystal Structure of S-6'-Me-3'-Fluoro Hexitol Nucleic Acid (pdb code 3v06). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total only one binding site of Strontium was determined in the Crystal Structure of S-6'-Me-3'-Fluoro Hexitol Nucleic Acid, PDB code: 3v06:

Strontium binding site 1 out of 1 in 3v06

Go back to Strontium Binding Sites List in 3v06
Strontium binding site 1 out of 1 in the Crystal Structure of S-6'-Me-3'-Fluoro Hexitol Nucleic Acid


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Crystal Structure of S-6'-Me-3'-Fluoro Hexitol Nucleic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr201

b:29.0
occ:1.00
O A:HOH334 2.4 20.7 1.0
O A:HOH335 2.5 20.7 1.0
O A:HOH318 2.5 26.3 1.0
O B:HOH317 2.5 27.4 1.0
O B:HOH312 4.4 23.2 1.0
O A:HOH346 4.5 29.5 1.0
N6 A:DA105 4.6 14.3 1.0
O B:HOH316 4.6 30.0 1.0
O6 A:DG103 4.8 14.9 1.0
O4 B:F5H206 4.8 15.9 1.0
O4 A:DT104 4.8 13.4 1.0
N7 A:DG103 4.9 14.0 1.0
O A:HOH307 5.0 27.4 1.0

Reference:

P.S.Pallan, J.Yu, C.R.Allerson, E.E.Swayze, P.Seth, M.Egli. Insights From Crystal Structures Into the Opposite Effects on Rna Affinity Caused By the S- and R-6'-Methyl Backbone Modifications of 3'-Fluoro Hexitol Nucleic Acid. Biochemistry V. 51 7 2012.
ISSN: ISSN 0006-2960
PubMed: 22229409
DOI: 10.1021/BI201810R
Page generated: Wed Dec 16 02:23:51 2020

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