Atomistry » Strontium » PDB 3ilg-4rne » 434d
Atomistry »
  Strontium »
    PDB 3ilg-4rne »
      434d »

Strontium in PDB 434d: 5'-R(*Up*Ap*Gp*Cp*Up*Cp*C)-3', 5'-R(*Gp*Gp*Gp*Gp*Cp*Up*A)-3'

Protein crystallography data

The structure of 5'-R(*Up*Ap*Gp*Cp*Up*Cp*C)-3', 5'-R(*Gp*Gp*Gp*Gp*Cp*Up*A)-3', PDB code: 434d was solved by U.Mueller, H.Schuebel, M.Sprinzl, U.Heinemann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.16
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 26.300, 28.900, 28.900, 110.50, 96.90, 96.90
R / Rfree (%) 12.3 / 18

Other elements in 434d:

The structure of 5'-R(*Up*Ap*Gp*Cp*Up*Cp*C)-3', 5'-R(*Gp*Gp*Gp*Gp*Cp*Up*A)-3' also contains other interesting chemical elements:

Sodium (Na) 1 atom

Strontium Binding Sites:

The binding sites of Strontium atom in the 5'-R(*Up*Ap*Gp*Cp*Up*Cp*C)-3', 5'-R(*Gp*Gp*Gp*Gp*Cp*Up*A)-3' (pdb code 434d). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total only one binding site of Strontium was determined in the 5'-R(*Up*Ap*Gp*Cp*Up*Cp*C)-3', 5'-R(*Gp*Gp*Gp*Gp*Cp*Up*A)-3', PDB code: 434d:

Strontium binding site 1 out of 1 in 434d

Go back to Strontium Binding Sites List in 434d
Strontium binding site 1 out of 1 in the 5'-R(*Up*Ap*Gp*Cp*Up*Cp*C)-3', 5'-R(*Gp*Gp*Gp*Gp*Cp*Up*A)-3'


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of 5'-R(*Up*Ap*Gp*Cp*Up*Cp*C)-3', 5'-R(*Gp*Gp*Gp*Gp*Cp*Up*A)-3' within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr1

b:18.1
occ:1.00
O B:HOH1023 2.4 46.5 1.0
O B:HOH1034 2.5 22.3 1.0
O3' B:A14 2.5 18.8 1.0
O2' B:A14 2.6 17.9 1.0
C3' B:A14 3.5 17.3 1.0
C2' B:A14 3.6 16.6 1.0
C4' B:A14 4.1 17.8 1.0
O C:HOH1020 4.7 37.5 1.0
C1' B:A14 4.8 17.1 1.0
O B:HOH1008 4.8 28.7 1.0
O2' C:U1 4.9 18.8 1.0
O B:HOH1042 4.9 24.8 1.0

Reference:

U.Mueller, H.Schubel, M.Sprinzl, U.Heinemann. Crystal Structure of Acceptor Stem of Trna(Ala) From Escherichia Coli Shows Unique G.U Wobble Base Pair at 1.16 A Resolution. Rna V. 5 670 1999.
ISSN: ISSN 1355-8382
PubMed: 10334337
DOI: 10.1017/S1355838299982304
Page generated: Wed Dec 16 02:23:55 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy