Atomistry » Strontium » PDB 3ilg-4rne » 4rby
Atomistry »
  Strontium »
    PDB 3ilg-4rne »
      4rby »

Strontium in PDB 4rby: First X-Ray Structure of Rna Containing Guanosine Phosphorodithioate

Protein crystallography data

The structure of First X-Ray Structure of Rna Containing Guanosine Phosphorodithioate, PDB code: 4rby was solved by P.S.Pallan, M.Egli, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.19
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 40.932, 35.015, 31.873, 90.00, 128.80, 90.00
R / Rfree (%) 18.1 / 21.3

Strontium Binding Sites:

The binding sites of Strontium atom in the First X-Ray Structure of Rna Containing Guanosine Phosphorodithioate (pdb code 4rby). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 2 binding sites of Strontium where determined in the First X-Ray Structure of Rna Containing Guanosine Phosphorodithioate, PDB code: 4rby:
Jump to Strontium binding site number: 1; 2;

Strontium binding site 1 out of 2 in 4rby

Go back to Strontium Binding Sites List in 4rby
Strontium binding site 1 out of 2 in the First X-Ray Structure of Rna Containing Guanosine Phosphorodithioate


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of First X-Ray Structure of Rna Containing Guanosine Phosphorodithioate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr401

b:6.1
occ:0.25
SR A:SR402 1.0 9.9 0.2
O A:HOH515 2.7 15.3 1.0
O A:HOH516 2.7 17.8 1.0
O A:HOH585 3.2 64.2 1.0
O4 A:U108 3.4 11.8 1.0
O A:HOH563 3.4 29.9 1.0
O A:HOH580 3.5 34.3 1.0
O A:HOH504 3.6 14.0 1.0
O4 A:U107 4.4 8.1 1.0
O A:HOH505 4.4 16.9 1.0
C4 A:U108 4.4 11.0 1.0
O A:HOH549 4.5 13.2 1.0
C5 A:U107 4.7 8.2 1.0
C5 A:U108 4.9 12.3 1.0
C4 A:U107 4.9 7.5 1.0
O A:HOH506 5.0 16.3 1.0

Strontium binding site 2 out of 2 in 4rby

Go back to Strontium Binding Sites List in 4rby
Strontium binding site 2 out of 2 in the First X-Ray Structure of Rna Containing Guanosine Phosphorodithioate


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of First X-Ray Structure of Rna Containing Guanosine Phosphorodithioate within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr402

b:9.9
occ:0.25
SR A:SR401 1.0 6.1 0.2
O A:HOH585 2.5 64.2 1.0
O A:HOH515 2.7 15.3 1.0
O A:HOH580 2.8 34.3 1.0
O A:HOH504 3.1 14.0 1.0
O A:HOH516 3.2 17.8 1.0
O A:HOH563 4.3 29.9 1.0
O4 A:U108 4.3 11.8 1.0
O A:HOH549 4.3 13.2 1.0
O A:HOH529 4.5 18.1 1.0
O A:HOH505 4.7 16.9 1.0
O4 A:U107 4.8 8.1 1.0
OP2 A:A106 4.9 11.9 1.0
O A:HOH562 4.9 24.5 1.0
C5 A:U107 4.9 8.2 1.0

Reference:

P.S.Pallan, X.Yang, M.Sierant, N.D.Abeydeera, T.Hassell, C.Martinez, M.Janicka, B.Nawrot, M.Egli. Crystal Structure, Stability and Sirna Activity of Phosphorodithioate-Modified Rnas To Be Published.
Page generated: Wed Dec 16 02:24:06 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy