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Strontium in PDB 4u6l: Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2

Protein crystallography data

The structure of Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2, PDB code: 4u6l was solved by J.Kondo, Y.Nomura, Y.Kitahara, S.Obika, H.Torigoe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.02 / 1.90
Space group P 61
Cell size a, b, c (Å), α, β, γ (°) 48.520, 48.520, 46.520, 90.00, 90.00, 120.00
R / Rfree (%) 25.1 / 27.5

Other elements in 4u6l:

The structure of Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2 also contains other interesting chemical elements:

Cobalt (Co) 1 atom

Strontium Binding Sites:

The binding sites of Strontium atom in the Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2 (pdb code 4u6l). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 2 binding sites of Strontium where determined in the Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2, PDB code: 4u6l:
Jump to Strontium binding site number: 1; 2;

Strontium binding site 1 out of 2 in 4u6l

Go back to Strontium Binding Sites List in 4u6l
Strontium binding site 1 out of 2 in the Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr102

b:51.2
occ:1.00
O A:HOH225 2.7 32.4 1.0
O A:HOH224 2.7 32.4 1.0
O A:HOH219 2.8 53.1 1.0
O A:HOH226 2.9 32.4 1.0
O A:HOH223 3.0 50.8 1.0
N7 A:A3 4.3 27.3 1.0
O A:HOH215 4.5 58.5 1.0
OP2 A:G4 4.6 34.8 1.0
C8 A:A3 4.6 28.4 1.0
N7 A:G4 4.7 34.5 1.0
O B:HOH225 4.8 36.1 1.0
O A:HOH214 4.9 45.8 1.0
N6 A:A5 4.9 30.0 1.0
N7 A:A5 5.0 33.7 1.0
C5 A:A3 5.0 24.9 1.0
OP2 A:A3 5.0 38.3 1.0

Strontium binding site 2 out of 2 in 4u6l

Go back to Strontium Binding Sites List in 4u6l
Strontium binding site 2 out of 2 in the Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr101

b:0.1
occ:1.00
OP1 B:DT2 4.3 35.1 1.0

Reference:

J.Kondo, Y.Nomura, Y.Kitahara, S.Obika, H.Torigoe. Crystal Structure of Dna/Rna Duplex Obtained in the Presence of [Co(NH3)6]CL3 and SRCL2 To Be Published.
Page generated: Fri Oct 11 06:05:39 2024

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