Strontium in PDB 5cv2: Structural Implications of Homo-Pyrimidine Base Pairs on the Parallel- Stranded D(Gay) Motif

The structure of Structural Implications of Homo-Pyrimidine Base Pairs on the Parallel- Stranded D(Gay) Motif, PDB code: 5cv2 was solved by S.Tripathi, P.Paukstelis, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.16 / 2.69
Space group	P 65 2 2
Cell size a, b, c (Å), α, β, γ (°)	25.582, 25.582, 386.453, 90.00, 90.00, 120.00
R / Rfree (%)	26.5 / 29.7

The binding sites of Strontium atom in the Structural Implications of Homo-Pyrimidine Base Pairs on the Parallel- Stranded D(Gay) Motif (pdb code 5cv2). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 3 binding sites of Strontium where determined in the Structural Implications of Homo-Pyrimidine Base Pairs on the Parallel- Stranded D(Gay) Motif, PDB code: 5cv2:
Jump to Strontium binding site number: 1; 2; 3;

Strontium binding site 1 out of 3 in the Structural Implications of Homo-Pyrimidine Base Pairs on the Parallel- Stranded D(Gay) Motif


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Structural Implications of Homo-Pyrimidine Base Pairs on the Parallel- Stranded D(Gay) Motif within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr101 b:0.6 occ:1.00 OP2 A:DC4 4.9 39.7 1.0

Strontium binding site 2 out of 3 in the Structural Implications of Homo-Pyrimidine Base Pairs on the Parallel- Stranded D(Gay) Motif


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Structural Implications of Homo-Pyrimidine Base Pairs on the Parallel- Stranded D(Gay) Motif within 5.0Å range: probe atom residue distance (Å) B Occ B:Sr101 b:99.5 occ:1.00 O6 B:DG9 2.8 57.2 1.0 OP2 B:DC8 3.8 65.9 1.0 C6 B:DG9 4.0 47.4 1.0 O B:HOH204 4.2 26.9 1.0 C5 B:DG9 4.9 52.8 1.0 N1 B:DG9 4.9 46.3 1.0 C1' A:DA10 5.0 59.4 1.0

Strontium binding site 3 out of 3 in the Structural Implications of Homo-Pyrimidine Base Pairs on the Parallel- Stranded D(Gay) Motif


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of Structural Implications of Homo-Pyrimidine Base Pairs on the Parallel- Stranded D(Gay) Motif within 5.0Å range: probe atom residue distance (Å) B Occ B:Sr102 b:1.0 occ:1.00 O6 B:DG12 2.7 52.5 1.0 C6 B:DG12 3.8 55.4 1.0 N7 B:DG12 4.2 69.8 1.0 C5 B:DG12 4.4 63.9 1.0 N3 A:DA13 4.6 82.4 1.0 OP2 B:DC11 4.6 80.3 1.0

S.Tripathi, P.J.Paukstelis. Structural Implications of Homopyrimidine Base Pairs in the Parallel-Stranded D(Yga) Motif. Chembiochem V. 17 1177 2016.
ISSN: ESSN 1439-7633
PubMed: 26629965
DOI: 10.1002/CBIC.201500491