Strontium in PDB 5tdj: Rna Decamer Duplex with Four 2'-5'-Linkages

The structure of Rna Decamer Duplex with Four 2'-5'-Linkages, PDB code: 5tdj was solved by Z.Luo, J.Sheng, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.90 / 1.50
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	27.538, 94.455, 21.283, 90.00, 111.19, 90.00
R / Rfree (%)	15.2 / 17

The binding sites of Strontium atom in the Rna Decamer Duplex with Four 2'-5'-Linkages (pdb code 5tdj). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total only one binding site of Strontium was determined in the Rna Decamer Duplex with Four 2'-5'-Linkages, PDB code: 5tdj:

Strontium binding site 1 out of 1 in the Rna Decamer Duplex with Four 2'-5'-Linkages


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Rna Decamer Duplex with Four 2'-5'-Linkages within 5.0Å range: probe atom residue distance (Å) B Occ B:Sr101 b:78.7 occ:0.50 O B:HOH212 2.1 40.0 1.0 O B:HOH214 2.6 29.2 1.0 O B:HOH204 3.3 42.6 1.0 O6 B:G10 3.8 90.7 1.0 N7 B:G10 4.3 44.9 1.0 C6 B:G10 4.6 41.7 1.0 O6 B:G9 4.8 32.4 1.0 C5 B:G10 4.8 42.8 1.0 N7 B:G9 4.9 29.1 1.0

F.Shen, Z.Luo, H.Liu, R.Wang, S.Zhang, J.Gan, J.Sheng. Structural Insights Into Rna Duplexes with Multiple 2 -5 -Linkages. Nucleic Acids Res. V. 45 3537 2017.
ISSN: ESSN 1362-4962
PubMed: 28034958
DOI: 10.1093/NAR/GKW1307