Strontium in PDB 5w36: Crystal Structure of the Rna Polymerase Domain (Rpd) of Mycobacterium Tuberculosis Primase Dnag in Complex with A Double-Stranded Dna Oligomer with A 6-Nucleotide Overhang

The structure of Crystal Structure of the Rna Polymerase Domain (Rpd) of Mycobacterium Tuberculosis Primase Dnag in Complex with A Double-Stranded Dna Oligomer with A 6-Nucleotide Overhang, PDB code: 5w36 was solved by C.Hou, O.V.Tsodikov, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.00 / 2.46
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	43.837, 210.936, 46.046, 90.00, 106.78, 90.00
R / Rfree (%)	21.5 / 26.9

The binding sites of Strontium atom in the Crystal Structure of the Rna Polymerase Domain (Rpd) of Mycobacterium Tuberculosis Primase Dnag in Complex with A Double-Stranded Dna Oligomer with A 6-Nucleotide Overhang (pdb code 5w36). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total only one binding site of Strontium was determined in the Crystal Structure of the Rna Polymerase Domain (Rpd) of Mycobacterium Tuberculosis Primase Dnag in Complex with A Double-Stranded Dna Oligomer with A 6-Nucleotide Overhang, PDB code: 5w36:

Strontium binding site 1 out of 1 in the Crystal Structure of the Rna Polymerase Domain (Rpd) of Mycobacterium Tuberculosis Primase Dnag in Complex with A Double-Stranded Dna Oligomer with A 6-Nucleotide Overhang


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Crystal Structure of the Rna Polymerase Domain (Rpd) of Mycobacterium Tuberculosis Primase Dnag in Complex with A Double-Stranded Dna Oligomer with A 6-Nucleotide Overhang within 5.0Å range: probe atom residue distance (Å) B Occ G:Sr101 b:0.8 occ:1.00 O4' G:DG5 2.5 0.2 1.0 O3' G:DG5 2.6 0.1 1.0 C4' G:DG5 3.0 0.9 1.0 C1' G:DG5 3.1 0.6 1.0 C3' G:DG5 3.3 0.6 1.0 OD2 A:ASP352 3.5 97.0 1.0 OD1 A:ASP355 3.6 87.3 1.0 C2' G:DG5 3.9 0.6 1.0 C5' G:DT6 3.9 0.3 1.0 P G:DT6 3.9 0.5 1.0 OD1 A:ASP352 4.1 83.9 1.0 CG A:ASP352 4.1 92.4 1.0 O5' G:DT6 4.1 0.2 1.0 OP1 G:DT6 4.3 95.6 1.0 N9 G:DG5 4.3 0.3 1.0 CG A:ASP355 4.3 83.5 1.0 C5' G:DG5 4.4 0.4 1.0 OD2 A:ASP355 4.5 88.9 1.0 N3 G:DG5 4.9 0.9 1.0

C.Hou, T.Biswas, O.V.Tsodikov. Structures of the Catalytic Domain of Bacterial Primase Dnag in Complexes with Dna Provide Insight Into Key Priming Events. Biochemistry V. 57 2084 2018.
ISSN: ISSN 1520-4995
PubMed: 29558114
DOI: 10.1021/ACS.BIOCHEM.8B00036