Strontium in PDB 5xwg: Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion

The structure of Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion, PDB code: 5xwg was solved by H.Kanazawa, J.Kondo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	21.53 / 3.00
Space group	I 21 3
Cell size a, b, c (Å), α, β, γ (°)	80.544, 80.544, 80.544, 90.00, 90.00, 90.00
R / Rfree (%)	21.7 / 22.6

The structure of Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion also contains other interesting chemical elements:

Bromine

(Br)

1 atom

The binding sites of Strontium atom in the Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion (pdb code 5xwg). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 3 binding sites of Strontium where determined in the Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion, PDB code: 5xwg:
Jump to Strontium binding site number: 1; 2; 3;

Strontium binding site 1 out of 3 in the Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr101 b:0.2 occ:1.00 O2' A:C19 2.5 96.3 1.0 O3' A:C19 3.0 0.8 1.0 C2' A:C19 3.5 81.1 1.0 C3' A:C19 3.6 88.1 1.0 C4' A:C19 4.1 96.2 1.0 OP2 A:U18 4.3 86.7 1.0 C1' A:C19 4.7 89.3 1.0 O4' A:C19 4.9 0.7 1.0

Strontium binding site 2 out of 3 in the Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr102 b:0.3 occ:0.50 OP2 A:C10 3.8 97.6 1.0 N7 A:G11 3.8 96.8 1.0 O6 A:G11 4.1 0.0 1.0 C5 A:G11 4.7 94.5 1.0 C6 A:G11 4.8 0.7 1.0 C8 A:G11 4.8 0.7 1.0

Strontium binding site 3 out of 3 in the Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Metal Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr103 b:0.1 occ:1.00 OP2 A:A14 4.4 0.5 1.0 N7 A:A15 4.7 95.4 1.0 OP2 A:A15 4.7 0.1 1.0

H.Kanazawa, J.Kondo. Crystal Structure of A Novel Rna Motif That Allows For Precise Positioning of A Single Metal Ion. J. Inorg. Biochem. V. 176 140 2017.
ISSN: ISSN 1873-3344
PubMed: 28898762
DOI: 10.1016/J.JINORGBIO.2017.08.029