Strontium in PDB 6e0v: Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92

The structure of Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92, PDB code: 6e0v was solved by P.G.Leiman, C.Browning, R.Gerardy-Schahn, M.M.Shneider, M.Plattner, D.Schwarzer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.15 / 1.75
Space group	P 3
Cell size a, b, c (Å), α, β, γ (°)	118.400, 118.400, 140.166, 90.00, 90.00, 120.00
R / Rfree (%)	13.4 / 16.3

The structure of Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92 also contains other interesting chemical elements:

Chlorine

(Cl)

9 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Strontium atom in the Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92 (pdb code 6e0v). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 24 binding sites of Strontium where determined in the Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92, PDB code: 6e0v:
Jump to Strontium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Strontium binding site 1 out of 24 in the Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92 within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr901 b:15.8 occ:0.33 O A:HOH1221 2.5 30.6 1.0 O A:HOH1323 2.6 21.8 1.0 O A:HOH1174 2.6 23.7 1.0 O A:HOH1150 2.6 30.3 0.3 HH11 A:ARG471 4.3 34.9 0.5 OD2 A:ASP472 4.5 16.2 1.0 OD1 A:ASP503 4.5 19.1 1.0 OD1 A:ASP472 4.5 16.6 1.0 O A:HOH1010 4.6 40.5 1.0 OD2 A:ASP503 4.6 33.4 1.0 HH12 A:ARG471 4.7 34.9 0.5 OD1 A:ASN542 4.8 29.3 1.0 NH1 A:ARG471 4.9 29.1 0.5 HD2 A:ARG471 4.9 20.0 0.5 CG A:ASP503 5.0 27.8 1.0 CG A:ASP472 5.0 18.5 1.0

Strontium binding site 2 out of 24 in the Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92 within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr902 b:18.7 occ:0.55 O A:HOH1643 2.4 36.7 1.0 O A:HOH1678 2.5 30.0 1.0 O A:HOH1667 2.6 39.0 1.0 OD1 A:ASN467 2.6 28.9 0.8 HA A:ASN467 3.3 14.9 1.0 OD1 A:ASN467 3.4 28.9 0.2 O A:ASP499 3.6 20.0 1.0 HB3 A:ASP499 3.7 17.4 1.0 CG A:ASN467 3.8 20.9 0.8 CA A:ASN467 4.2 12.1 0.8 CA A:ASN467 4.2 12.4 0.2 HB3 A:ASN467 4.2 19.3 0.2 CG A:ASN467 4.2 21.5 0.2 C A:ASP499 4.3 18.6 1.0 CB A:ASN467 4.4 15.3 0.8 HB3 A:ASN467 4.4 18.3 0.8 CB A:ASN467 4.4 16.1 0.2 O A:HOH1042 4.5 34.3 1.0 CB A:ASP499 4.5 14.5 1.0 HA A:PHE500 4.7 14.5 1.0 C A:ASN467 4.8 16.8 1.0 ND2 A:ASN467 4.8 20.8 0.8 HB2 A:ASP499 4.9 17.4 1.0 HA A:ASP499 4.9 19.9 1.0 CA A:ASP499 4.9 16.6 1.0 HD21 A:ASN467 4.9 25.0 0.8 O A:HOH1340 4.9 36.3 1.0

Strontium binding site 3 out of 24 in the Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92 within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr903 b:26.1 occ:0.55 O A:HOH1429 2.3 43.8 1.0 O A:HOH1259 2.4 40.6 1.0 O A:HOH1950 2.6 51.0 1.0 O A:ALA777 2.7 21.4 1.0 O A:HOH1551 2.7 42.2 1.0 O A:HOH1060 2.8 42.3 1.0 O A:HOH1064 2.8 36.1 1.0 HB1 A:ALA777 3.1 25.7 1.0 HA A:ALA777 3.7 21.1 1.0 C A:ALA777 3.7 24.1 1.0 CB A:ALA777 3.9 21.4 1.0 CA A:ALA777 4.0 17.5 1.0 O A:HOH1657 4.2 52.9 1.0 O A:HOH1670 4.3 50.4 1.0 HB2 A:ALA777 4.4 25.7 1.0 HB3 A:ALA777 4.5 25.7 1.0 O A:HOH1226 4.6 49.9 1.0 O A:HOH1185 4.6 39.0 1.0 OE2 A:GLU630 4.8 32.7 1.0 HA A:ASP778 4.8 21.5 1.0 N A:ASP778 4.9 18.8 1.0 OD1 A:ASP629 4.9 30.6 1.0 O A:HOH1423 4.9 36.5 1.0 OD2 A:ASP629 5.0 30.6 1.0

Strontium binding site 4 out of 24 in the Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 4 of Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92 within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr904 b:28.9 occ:0.34 SR A:SR906 2.3 30.7 0.4 O A:HOH1251 2.6 31.5 1.0 O A:HOH1477 2.6 43.3 1.0 OD2 A:ASP383 4.1 16.4 1.0 SR A:SR905 4.5 27.6 0.4 O A:HOH1336 4.6 21.6 1.0 OD1 A:ASP383 4.7 18.0 1.0 CG A:ASP383 4.8 19.1 1.0 O A:HOH1610 4.9 26.2 1.0 HD22 A:ASN411 4.9 20.3 1.0

Strontium binding site 5 out of 24 in the Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 5 of Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92 within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr905 b:27.6 occ:0.38 O A:HOH1883 3.0 35.9 1.0 O A:HOH1915 3.1 48.1 1.0 O A:HOH1477 3.3 43.3 1.0 SR A:SR906 3.5 30.7 0.4 O A:HOH1336 4.1 21.6 1.0 SR A:SR904 4.5 28.9 0.3 O A:HOH1610 4.6 26.2 1.0 O A:HOH1045 4.8 28.8 1.0 HE1 A:HIS382 4.8 21.8 1.0

Strontium binding site 6 out of 24 in the Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 6 of Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92 within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr906 b:30.7 occ:0.38 SR A:SR904 2.3 28.9 0.3 O A:HOH1477 2.4 43.3 1.0 O A:HOH1336 2.6 21.6 1.0 SR A:SR905 3.5 27.6 0.4 OD2 A:ASP383 4.5 16.4 1.0 O A:HOH1251 4.6 31.5 1.0 HD1 A:HIS382 4.6 17.3 1.0 OH A:TYR380 4.6 17.2 1.0 HH A:TYR380 4.7 20.6 1.0 HE1 A:HIS382 4.8 21.8 1.0 O A:HOH1883 4.9 35.9 1.0 ND1 A:HIS382 4.9 14.4 1.0 CE1 A:HIS382 5.0 18.1 1.0 O A:HOH1610 5.0 26.2 1.0

Strontium binding site 7 out of 24 in the Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 7 of Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92 within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr907 b:65.3 occ:0.52 O A:HOH1783 2.3 29.7 1.0 O A:HOH1044 2.5 36.2 1.0 O A:HOH1623 2.6 57.9 1.0 O A:HOH1347 2.6 57.0 1.0 O A:HOH1814 2.7 43.8 1.0 O A:HOH1917 2.8 32.1 1.0 HZ1 A:LYS466 3.5 52.9 1.0 O A:HOH1167 3.6 46.8 1.0 HZ3 A:LYS466 3.9 52.9 1.0 NZ A:LYS466 4.2 44.0 1.0 O A:HOH1266 4.2 20.2 1.0 O A:HOH1068 4.3 39.9 1.0 OE1 A:GLN498 4.6 16.3 1.0 HZ2 A:LYS466 4.7 52.9 1.0 O A:HOH1105 4.8 27.1 1.0 O A:HOH1089 4.9 28.4 1.0 OD1 A:ASP439 4.9 26.4 1.0

Strontium binding site 8 out of 24 in the Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 8 of Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92 within 5.0Å range: probe atom residue distance (Å) B Occ B:Sr901 b:17.2 occ:0.33 O B:HOH1586 2.4 34.3 1.0 O B:HOH1259 2.6 25.4 1.0 O B:HOH1473 2.6 27.9 1.0 O B:HOH1154 2.7 29.5 0.3 O B:HOH1011 4.4 42.5 1.0 OD2 B:ASP472 4.5 19.8 1.0 OD1 B:ASP472 4.6 18.8 1.0 OD2 B:ASP503 4.7 30.0 1.0 OD1 B:ASP503 4.7 18.1 1.0

Strontium binding site 9 out of 24 in the Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 9 of Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92 within 5.0Å range: probe atom residue distance (Å) B Occ B:Sr902 b:26.5 occ:0.63 O B:HOH1561 2.6 33.5 1.0 O B:HOH1673 2.6 37.2 1.0 OD1 B:ASN467 2.6 35.0 1.0 HA B:ASN467 3.5 16.8 1.0 HB3 B:ASP499 3.8 19.2 1.0 CG B:ASN467 3.8 30.7 1.0 O B:ASP499 3.9 19.7 1.0 O B:HOH1443 4.1 45.6 1.0 CA B:ASN467 4.3 14.0 1.0 CB B:ASN467 4.5 17.2 1.0 HB3 B:ASN467 4.5 20.7 1.0 C B:ASP499 4.6 16.9 1.0 O B:HOH1330 4.6 34.2 1.0 O B:HOH1038 4.6 34.2 1.0 CB B:ASP499 4.7 16.0 1.0 ND2 B:ASN467 4.9 29.2 1.0 HD21 B:ASN467 4.9 35.1 1.0 HA B:PHE500 4.9 20.3 1.0 C B:ASN467 4.9 17.1 1.0

Strontium binding site 10 out of 24 in the Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 10 of Apo Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92 within 5.0Å range: probe atom residue distance (Å) B Occ B:Sr903 b:29.3 occ:0.58 O B:HOH1875 2.4 50.8 1.0 O B:HOH1310 2.4 48.3 1.0 O B:HOH1491 2.5 40.2 1.0 O B:ALA777 2.6 28.0 1.0 O B:HOH1178 2.7 32.2 1.0 O B:HOH1044 2.7 39.4 1.0 O B:HOH1871 2.9 51.4 1.0 O B:HOH1249 3.0 40.2 1.0 HB1 B:ALA777 3.1 26.5 1.0 C B:ALA777 3.6 22.5 1.0 HA B:ALA777 3.6 29.1 1.0 CB B:ALA777 3.9 22.1 1.0 CA B:ALA777 3.9 24.3 1.0 O B:HOH1298 4.4 55.2 1.0 HB2 B:ALA777 4.5 26.5 1.0 O B:HOH1655 4.5 47.5 1.0 HB3 B:ALA777 4.5 26.5 1.0 O B:HOH1641 4.5 47.1 1.0 O B:HOH1105 4.6 41.1 1.0 O B:HOH1779 4.6 65.7 1.0 HA B:ASP778 4.8 27.8 1.0 N B:ASP778 4.8 20.7 1.0 OE2 B:GLU630 4.8 32.1 1.0 OD1 B:ASP629 4.9 39.6 1.0 OD1 B:ASP778 4.9 28.4 1.0 O B:HOH1442 5.0 44.5 1.0

C.Browning, M.Plattner, M.M.Shneider, R.Gerardy-Schahn, P.G.Leiman, D.Schwarzer. Crystal Structure of the Colanidase Tailspike Protein GP150 of Phage PHI92 Complexed with One Repeating Unit of Colanic Acid To Be Published.