Strontium in PDB 6p5t: Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide
Protein crystallography data
The structure of Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide, PDB code: 6p5t
was solved by
A.C.Chan,
J.Herrmann,
J.Smit,
S.Wakatsuki,
M.E.Murphy,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.30 /
2.10
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
210.729,
80.564,
221.833,
90.00,
117.44,
90.00
|
R / Rfree (%)
|
20.6 /
24.3
|
Other elements in 6p5t:
The structure of Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide also contains other interesting chemical elements:
Strontium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
40;
Page 5, Binding sites: 41 -
50;
Page 6, Binding sites: 51 -
60;
Page 7, Binding sites: 61 -
70;
Page 8, Binding sites: 71 -
80;
Page 9, Binding sites: 81 -
90;
Page 10, Binding sites: 91 -
100;
Page 11, Binding sites: 101 -
110;
Page 12, Binding sites: 111 -
120;
Page 13, Binding sites: 121 -
124;
Binding sites:
The binding sites of Strontium atom in the Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide
(pdb code 6p5t). This binding sites where shown within
5.0 Angstroms radius around Strontium atom.
In total 124 binding sites of Strontium where determined in the
Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide, PDB code: 6p5t:
Jump to Strontium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Strontium binding site 1 out
of 124 in 6p5t
Go back to
Strontium Binding Sites List in 6p5t
Strontium binding site 1 out
of 124 in the Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide
Mono view
Stereo pair view
|
A full contact list of Strontium with other atoms in the Sr binding
site number 1 of Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sr1130
b:31.4
occ:1.00
|
OD1
|
A:ASP268
|
2.4
|
30.5
|
1.0
|
O
|
A:ALA291
|
2.4
|
30.4
|
1.0
|
OD2
|
A:ASP294
|
2.4
|
33.7
|
1.0
|
O
|
A:THR264
|
2.4
|
36.5
|
1.0
|
O
|
A:GLY289
|
2.5
|
29.5
|
1.0
|
O
|
A:ASN266
|
2.5
|
36.7
|
1.0
|
OD1
|
A:ASP294
|
2.6
|
34.1
|
1.0
|
CG
|
A:ASP294
|
2.8
|
33.2
|
1.0
|
CG
|
A:ASP268
|
3.4
|
30.6
|
1.0
|
C
|
A:THR264
|
3.5
|
36.4
|
1.0
|
C
|
A:GLY289
|
3.5
|
28.9
|
1.0
|
C
|
A:ALA291
|
3.6
|
31.1
|
1.0
|
C
|
A:ASN266
|
3.7
|
37.3
|
1.0
|
C
|
A:GLY290
|
3.8
|
31.1
|
1.0
|
N
|
A:THR264
|
3.9
|
34.9
|
1.0
|
O
|
A:GLY290
|
3.9
|
29.8
|
1.0
|
N
|
A:ASN266
|
4.0
|
36.7
|
1.0
|
N
|
A:ALA291
|
4.1
|
31.6
|
1.0
|
OD2
|
A:ASP268
|
4.2
|
31.6
|
1.0
|
CA
|
A:GLY290
|
4.2
|
31.0
|
1.0
|
CB
|
A:ASP268
|
4.2
|
29.8
|
1.0
|
N
|
A:ASP268
|
4.2
|
33.2
|
1.0
|
C
|
A:ALA265
|
4.3
|
34.1
|
1.0
|
CA
|
A:THR264
|
4.3
|
36.0
|
1.0
|
N
|
A:GLY290
|
4.3
|
29.0
|
1.0
|
CB
|
A:ASP294
|
4.3
|
31.2
|
1.0
|
C
|
A:GLY263
|
4.4
|
32.9
|
1.0
|
N
|
A:ALA265
|
4.4
|
34.0
|
1.0
|
N
|
A:GLY292
|
4.5
|
38.8
|
1.0
|
CA
|
A:GLY289
|
4.5
|
27.0
|
1.0
|
CA
|
A:ALA291
|
4.5
|
32.2
|
1.0
|
CA
|
A:ASN266
|
4.5
|
37.6
|
1.0
|
OG1
|
A:THR264
|
4.5
|
36.2
|
1.0
|
CA
|
A:GLY292
|
4.5
|
37.9
|
1.0
|
CA
|
A:ALA265
|
4.5
|
34.1
|
1.0
|
CA
|
A:GLY263
|
4.6
|
31.8
|
1.0
|
C
|
A:GLY292
|
4.6
|
36.0
|
1.0
|
O
|
A:GLY292
|
4.6
|
35.4
|
1.0
|
N
|
A:ASN267
|
4.7
|
32.7
|
1.0
|
SR
|
A:SR1143
|
4.7
|
31.3
|
1.0
|
O
|
A:ALA265
|
4.8
|
35.2
|
1.0
|
CA
|
A:ASN267
|
4.8
|
33.0
|
1.0
|
CA
|
A:ASP268
|
4.9
|
31.7
|
1.0
|
C
|
A:ASN267
|
4.9
|
32.3
|
1.0
|
|
Strontium binding site 2 out
of 124 in 6p5t
Go back to
Strontium Binding Sites List in 6p5t
Strontium binding site 2 out
of 124 in the Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide
Mono view
Stereo pair view
|
A full contact list of Strontium with other atoms in the Sr binding
site number 2 of Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sr1131
b:35.1
occ:1.00
|
O
|
A:HOH1635
|
2.4
|
38.9
|
1.0
|
O
|
A:ALA559
|
2.4
|
30.9
|
1.0
|
O
|
A:HOH1615
|
2.4
|
26.7
|
1.0
|
OD2
|
A:ASP586
|
2.4
|
27.7
|
1.0
|
O
|
A:HOH1721
|
2.4
|
27.0
|
1.0
|
O
|
A:HOH1761
|
2.5
|
39.2
|
1.0
|
O
|
A:ASP562
|
2.5
|
29.9
|
1.0
|
OD1
|
A:ASP586
|
2.6
|
27.8
|
1.0
|
CG
|
A:ASP586
|
2.9
|
27.7
|
1.0
|
C
|
A:ALA559
|
3.6
|
30.2
|
1.0
|
O
|
A:HOH1914
|
3.6
|
51.0
|
1.0
|
C
|
A:ASP562
|
3.7
|
29.6
|
1.0
|
O
|
A:HOH1256
|
4.0
|
20.0
|
1.0
|
CA
|
A:ALA559
|
4.1
|
30.3
|
1.0
|
N
|
A:ASP562
|
4.3
|
28.9
|
1.0
|
O
|
A:ALA560
|
4.4
|
32.9
|
1.0
|
CB
|
A:ASP586
|
4.4
|
27.7
|
1.0
|
C
|
A:ALA560
|
4.5
|
31.8
|
1.0
|
N
|
A:ASP563
|
4.6
|
26.8
|
1.0
|
CA
|
A:ASP562
|
4.6
|
29.2
|
1.0
|
CA
|
A:ASP563
|
4.6
|
27.7
|
1.0
|
N
|
A:ALA560
|
4.7
|
30.6
|
1.0
|
N
|
A:GLY564
|
4.7
|
33.2
|
1.0
|
CB
|
A:ALA559
|
4.8
|
30.4
|
1.0
|
O
|
A:HOH1831
|
4.8
|
29.8
|
1.0
|
C
|
A:ALA561
|
4.9
|
37.0
|
1.0
|
OD2
|
A:ASP563
|
4.9
|
30.5
|
1.0
|
CA
|
A:ALA560
|
4.9
|
30.8
|
1.0
|
N
|
A:ALA561
|
4.9
|
36.1
|
1.0
|
|
Strontium binding site 3 out
of 124 in 6p5t
Go back to
Strontium Binding Sites List in 6p5t
Strontium binding site 3 out
of 124 in the Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide
Mono view
Stereo pair view
|
A full contact list of Strontium with other atoms in the Sr binding
site number 3 of Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sr1132
b:36.5
occ:1.00
|
O
|
A:HOH1299
|
2.4
|
31.0
|
1.0
|
O
|
A:HOH1214
|
2.4
|
37.4
|
1.0
|
O
|
A:LEU532
|
2.4
|
29.0
|
1.0
|
OD1
|
A:ASP562
|
2.5
|
28.8
|
1.0
|
O
|
A:HOH1766
|
2.5
|
26.7
|
1.0
|
OD2
|
A:ASP562
|
2.5
|
30.6
|
1.0
|
O
|
A:HOH1365
|
2.5
|
22.4
|
1.0
|
CG
|
A:ASP562
|
2.8
|
29.2
|
1.0
|
O
|
A:HOH1854
|
3.0
|
39.9
|
1.0
|
C
|
A:LEU532
|
3.6
|
28.9
|
1.0
|
O
|
A:HOH1420
|
4.1
|
31.6
|
1.0
|
CA
|
A:THR533
|
4.2
|
35.8
|
1.0
|
O
|
A:THR533
|
4.3
|
39.0
|
1.0
|
CB
|
A:ASP562
|
4.4
|
28.1
|
1.0
|
N
|
A:THR533
|
4.4
|
33.7
|
1.0
|
C
|
A:THR533
|
4.5
|
37.8
|
1.0
|
OD1
|
A:ASP563
|
4.5
|
30.5
|
1.0
|
O
|
A:HOH1534
|
4.6
|
29.4
|
1.0
|
N
|
A:LEU532
|
4.6
|
24.2
|
1.0
|
C
|
A:ALA531
|
4.7
|
33.4
|
1.0
|
OE1
|
A:GLU558
|
4.7
|
26.3
|
1.0
|
CA
|
A:LEU532
|
4.7
|
26.5
|
1.0
|
O
|
A:ALA534
|
4.8
|
23.0
|
1.0
|
O
|
A:ALA531
|
4.8
|
34.5
|
1.0
|
O
|
A:HOH1297
|
4.8
|
21.7
|
1.0
|
O
|
A:HOH1634
|
5.0
|
30.9
|
1.0
|
|
Strontium binding site 4 out
of 124 in 6p5t
Go back to
Strontium Binding Sites List in 6p5t
Strontium binding site 4 out
of 124 in the Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide
Mono view
Stereo pair view
|
A full contact list of Strontium with other atoms in the Sr binding
site number 4 of Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sr1133
b:33.8
occ:1.00
|
O
|
A:HOH1888
|
2.4
|
21.7
|
1.0
|
O
|
A:SER936
|
2.4
|
30.8
|
1.0
|
OG
|
A:SER936
|
2.4
|
29.4
|
1.0
|
O
|
A:HOH1340
|
2.4
|
30.8
|
1.0
|
O
|
A:GLY939
|
2.4
|
32.1
|
1.0
|
O
|
A:HOH2110
|
2.5
|
38.7
|
1.0
|
O
|
A:HOH1584
|
2.5
|
31.4
|
1.0
|
CB
|
A:SER936
|
3.4
|
30.5
|
1.0
|
C
|
A:SER936
|
3.5
|
30.4
|
1.0
|
C
|
A:GLY939
|
3.6
|
33.0
|
1.0
|
CA
|
A:SER936
|
4.0
|
30.4
|
1.0
|
O
|
A:HOH2105
|
4.3
|
31.2
|
1.0
|
OE2
|
A:GLU1021
|
4.4
|
28.3
|
1.0
|
O
|
A:VAL933
|
4.4
|
28.8
|
1.0
|
N
|
A:GLY939
|
4.5
|
34.5
|
1.0
|
N
|
A:SER936
|
4.5
|
29.6
|
1.0
|
N
|
A:ALA940
|
4.5
|
26.8
|
1.0
|
CA
|
A:GLY939
|
4.5
|
34.0
|
1.0
|
CA
|
A:ALA940
|
4.6
|
26.4
|
1.0
|
OE1
|
A:GLU1021
|
4.6
|
29.7
|
1.0
|
N
|
A:THR937
|
4.6
|
30.1
|
1.0
|
C
|
A:THR937
|
4.8
|
31.0
|
1.0
|
O
|
A:THR937
|
4.9
|
30.9
|
1.0
|
C
|
A:ASN938
|
4.9
|
30.6
|
1.0
|
CD
|
A:GLU1021
|
4.9
|
28.7
|
1.0
|
N
|
A:ASN938
|
4.9
|
29.7
|
1.0
|
|
Strontium binding site 5 out
of 124 in 6p5t
Go back to
Strontium Binding Sites List in 6p5t
Strontium binding site 5 out
of 124 in the Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide
Mono view
Stereo pair view
|
A full contact list of Strontium with other atoms in the Sr binding
site number 5 of Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sr1134
b:40.4
occ:1.00
|
OD1
|
A:ASP905
|
2.4
|
31.4
|
1.0
|
O
|
A:GLY883
|
2.4
|
28.1
|
1.0
|
O
|
A:THR902
|
2.4
|
31.1
|
1.0
|
OD2
|
A:ASP887
|
2.4
|
32.0
|
1.0
|
O
|
A:GLY900
|
2.4
|
27.6
|
1.0
|
O
|
A:GLY885
|
2.5
|
31.5
|
1.0
|
CG
|
A:ASP905
|
3.1
|
32.1
|
1.0
|
OD2
|
A:ASP905
|
3.1
|
33.6
|
1.0
|
CG
|
A:ASP887
|
3.5
|
30.1
|
1.0
|
C
|
A:GLY900
|
3.5
|
28.7
|
1.0
|
C
|
A:THR902
|
3.6
|
32.7
|
1.0
|
C
|
A:GLY883
|
3.6
|
28.3
|
1.0
|
C
|
A:GLY885
|
3.7
|
30.3
|
1.0
|
C
|
A:ALA884
|
3.8
|
33.5
|
1.0
|
C
|
A:GLY901
|
3.8
|
32.7
|
1.0
|
O
|
A:ALA884
|
3.9
|
32.5
|
1.0
|
O
|
A:GLY901
|
4.0
|
32.3
|
1.0
|
CB
|
A:ASP887
|
4.0
|
28.8
|
1.0
|
N
|
A:GLY885
|
4.0
|
32.5
|
1.0
|
CA
|
A:GLY901
|
4.1
|
32.3
|
1.0
|
N
|
A:THR902
|
4.2
|
34.4
|
1.0
|
N
|
A:ASP887
|
4.2
|
29.5
|
1.0
|
CA
|
A:ALA884
|
4.2
|
35.4
|
1.0
|
N
|
A:GLY901
|
4.3
|
31.5
|
1.0
|
N
|
A:ALA884
|
4.4
|
35.8
|
1.0
|
C
|
A:GLY882
|
4.4
|
29.9
|
1.0
|
N
|
A:GLY883
|
4.4
|
27.2
|
1.0
|
CA
|
A:GLY885
|
4.4
|
30.8
|
1.0
|
N
|
A:GLY903
|
4.4
|
39.3
|
1.0
|
OD1
|
A:ASP887
|
4.4
|
29.4
|
1.0
|
CA
|
A:GLY903
|
4.5
|
37.5
|
1.0
|
CA
|
A:THR902
|
4.5
|
34.7
|
1.0
|
CA
|
A:GLY900
|
4.5
|
27.6
|
1.0
|
CB
|
A:ASP905
|
4.5
|
31.0
|
1.0
|
O
|
A:GLY903
|
4.6
|
37.1
|
1.0
|
O
|
A:GLY882
|
4.7
|
29.1
|
1.0
|
CA
|
A:GLY883
|
4.7
|
28.1
|
1.0
|
CA
|
A:GLY882
|
4.7
|
28.5
|
1.0
|
N
|
A:ALA886
|
4.7
|
29.6
|
1.0
|
C
|
A:GLY903
|
4.7
|
36.8
|
1.0
|
CA
|
A:ASP887
|
4.7
|
28.2
|
1.0
|
SR
|
A:SR1147
|
4.9
|
28.1
|
0.6
|
CA
|
A:ALA886
|
4.9
|
28.2
|
1.0
|
C
|
A:ALA886
|
5.0
|
27.1
|
1.0
|
|
Strontium binding site 6 out
of 124 in 6p5t
Go back to
Strontium Binding Sites List in 6p5t
Strontium binding site 6 out
of 124 in the Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide
Mono view
Stereo pair view
|
A full contact list of Strontium with other atoms in the Sr binding
site number 6 of Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sr1135
b:38.7
occ:1.00
|
OD1
|
A:ASP656
|
2.4
|
28.2
|
1.0
|
O
|
A:ALA653
|
2.4
|
28.5
|
1.0
|
OD1
|
A:ASP638
|
2.4
|
26.7
|
1.0
|
O
|
A:GLY634
|
2.4
|
30.9
|
1.0
|
O
|
A:MET651
|
2.4
|
28.3
|
1.0
|
O
|
A:GLY636
|
2.5
|
31.9
|
1.0
|
OD2
|
A:ASP656
|
2.6
|
30.1
|
1.0
|
CG
|
A:ASP656
|
2.8
|
28.9
|
1.0
|
CG
|
A:ASP638
|
3.4
|
25.2
|
1.0
|
C
|
A:GLY634
|
3.6
|
31.0
|
1.0
|
C
|
A:MET651
|
3.6
|
29.3
|
1.0
|
C
|
A:GLY636
|
3.6
|
31.1
|
1.0
|
C
|
A:ALA653
|
3.6
|
29.2
|
1.0
|
C
|
A:GLY652
|
3.8
|
35.5
|
1.0
|
O
|
A:GLY652
|
3.8
|
34.8
|
1.0
|
N
|
A:GLY634
|
3.8
|
30.1
|
1.0
|
N
|
A:GLY636
|
4.0
|
33.1
|
1.0
|
N
|
A:ALA653
|
4.1
|
31.6
|
1.0
|
CA
|
A:GLY652
|
4.2
|
35.9
|
1.0
|
N
|
A:ASP638
|
4.2
|
24.3
|
1.0
|
CB
|
A:ASP638
|
4.2
|
24.4
|
1.0
|
O
|
A:HOH1402
|
4.3
|
27.1
|
1.0
|
OD2
|
A:ASP638
|
4.3
|
24.7
|
1.0
|
CA
|
A:GLY634
|
4.3
|
30.9
|
1.0
|
CB
|
A:ASP656
|
4.3
|
28.1
|
1.0
|
N
|
A:GLY652
|
4.3
|
35.1
|
1.0
|
C
|
A:ALA635
|
4.4
|
36.3
|
1.0
|
CA
|
A:GLY636
|
4.4
|
31.8
|
1.0
|
C
|
A:GLY633
|
4.5
|
25.1
|
1.0
|
CA
|
A:ALA653
|
4.5
|
31.2
|
1.0
|
N
|
A:ALA635
|
4.5
|
36.4
|
1.0
|
N
|
A:GLY654
|
4.6
|
31.5
|
1.0
|
CA
|
A:GLY654
|
4.6
|
30.1
|
1.0
|
O
|
A:GLY654
|
4.6
|
30.4
|
1.0
|
CA
|
A:MET651
|
4.6
|
28.9
|
1.0
|
CA
|
A:GLY633
|
4.6
|
24.2
|
1.0
|
N
|
A:ALA637
|
4.6
|
30.3
|
1.0
|
SR
|
A:SR1146
|
4.6
|
26.4
|
0.5
|
CA
|
A:ALA635
|
4.7
|
37.0
|
1.0
|
C
|
A:GLY654
|
4.7
|
29.6
|
1.0
|
CB
|
A:MET651
|
4.7
|
27.7
|
1.0
|
CA
|
A:ALA637
|
4.8
|
29.3
|
1.0
|
CA
|
A:ASP638
|
4.9
|
23.4
|
1.0
|
O
|
A:ALA635
|
5.0
|
37.3
|
1.0
|
C
|
A:ALA637
|
5.0
|
28.1
|
1.0
|
|
Strontium binding site 7 out
of 124 in 6p5t
Go back to
Strontium Binding Sites List in 6p5t
Strontium binding site 7 out
of 124 in the Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide
Mono view
Stereo pair view
|
A full contact list of Strontium with other atoms in the Sr binding
site number 7 of Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sr1136
b:35.5
occ:1.00
|
O
|
A:ALA966
|
2.4
|
29.7
|
1.0
|
O
|
A:GLY968
|
2.4
|
34.8
|
1.0
|
O
|
A:GLY994
|
2.4
|
33.2
|
1.0
|
O
|
A:SER992
|
2.5
|
36.8
|
1.0
|
OD2
|
A:ASP990
|
2.5
|
34.9
|
1.0
|
O
|
A:HOH1475
|
2.5
|
22.0
|
1.0
|
OD1
|
A:ASP990
|
2.5
|
33.4
|
1.0
|
CG
|
A:ASP990
|
2.8
|
33.7
|
1.0
|
C
|
A:ALA966
|
3.5
|
29.8
|
1.0
|
C
|
A:SER992
|
3.6
|
36.6
|
1.0
|
C
|
A:GLY968
|
3.6
|
35.6
|
1.0
|
C
|
A:GLY994
|
3.6
|
34.1
|
1.0
|
C
|
A:ALA993
|
4.1
|
44.2
|
1.0
|
N
|
A:GLY968
|
4.1
|
36.3
|
1.0
|
N
|
A:GLY994
|
4.1
|
33.6
|
1.0
|
CB
|
A:ALA966
|
4.2
|
28.4
|
1.0
|
CA
|
A:ALA966
|
4.2
|
28.9
|
1.0
|
O
|
A:ALA993
|
4.2
|
45.3
|
1.0
|
C
|
A:ALA967
|
4.2
|
37.6
|
1.0
|
CB
|
A:ASP990
|
4.3
|
32.7
|
1.0
|
N
|
A:GLY970
|
4.4
|
37.8
|
1.0
|
CA
|
A:SER992
|
4.4
|
35.6
|
1.0
|
N
|
A:ALA993
|
4.4
|
41.1
|
1.0
|
N
|
A:SER992
|
4.5
|
34.9
|
1.0
|
CA
|
A:GLY968
|
4.5
|
36.4
|
1.0
|
N
|
A:ASP969
|
4.5
|
41.9
|
1.0
|
CA
|
A:GLY994
|
4.5
|
34.4
|
1.0
|
N
|
A:ALA967
|
4.5
|
36.4
|
1.0
|
O
|
A:ALA967
|
4.5
|
38.1
|
1.0
|
CA
|
A:ALA993
|
4.6
|
42.7
|
1.0
|
CA
|
A:ASP969
|
4.6
|
41.5
|
1.0
|
O
|
A:HOH1261
|
4.6
|
30.0
|
1.0
|
CB
|
A:SER992
|
4.6
|
35.6
|
1.0
|
N
|
A:ALA995
|
4.6
|
37.1
|
1.0
|
CA
|
A:ALA967
|
4.7
|
37.7
|
1.0
|
CA
|
A:ALA995
|
4.8
|
37.4
|
1.0
|
O
|
A:HOH1532
|
4.8
|
28.5
|
1.0
|
O
|
A:THR996
|
4.9
|
31.6
|
1.0
|
OD2
|
A:ASP1002
|
4.9
|
32.5
|
1.0
|
C
|
A:ASP969
|
4.9
|
40.0
|
1.0
|
|
Strontium binding site 8 out
of 124 in 6p5t
Go back to
Strontium Binding Sites List in 6p5t
Strontium binding site 8 out
of 124 in the Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide
Mono view
Stereo pair view
|
A full contact list of Strontium with other atoms in the Sr binding
site number 8 of Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sr1137
b:34.6
occ:1.00
|
O
|
A:HOH1815
|
2.4
|
41.4
|
1.0
|
O
|
A:GLY903
|
2.4
|
37.1
|
1.0
|
O
|
A:HOH1663
|
2.4
|
33.6
|
1.0
|
O
|
A:GLY901
|
2.4
|
32.3
|
1.0
|
O
|
A:HOH1474
|
2.5
|
25.6
|
1.0
|
OD1
|
A:ASP928
|
2.5
|
32.5
|
1.0
|
OD2
|
A:ASP905
|
2.5
|
33.6
|
1.0
|
CG
|
A:ASP928
|
3.3
|
33.2
|
1.0
|
OD2
|
A:ASP928
|
3.3
|
34.4
|
1.0
|
CG
|
A:ASP905
|
3.6
|
32.1
|
1.0
|
C
|
A:GLY903
|
3.6
|
36.8
|
1.0
|
C
|
A:GLY901
|
3.7
|
32.7
|
1.0
|
N
|
A:GLY903
|
4.1
|
39.3
|
1.0
|
C
|
A:THR902
|
4.1
|
32.7
|
1.0
|
CB
|
A:ASP905
|
4.2
|
31.0
|
1.0
|
N
|
A:ASP905
|
4.2
|
32.0
|
1.0
|
N
|
A:GLY901
|
4.4
|
31.5
|
1.0
|
C
|
A:GLY900
|
4.4
|
28.7
|
1.0
|
O
|
A:THR902
|
4.4
|
31.1
|
1.0
|
CA
|
A:GLY903
|
4.5
|
37.5
|
1.0
|
CA
|
A:THR902
|
4.5
|
34.7
|
1.0
|
O
|
A:HOH2037
|
4.5
|
52.2
|
1.0
|
OD1
|
A:ASP905
|
4.6
|
31.4
|
1.0
|
N
|
A:THR902
|
4.6
|
34.4
|
1.0
|
O
|
A:ASP923
|
4.6
|
33.1
|
1.0
|
N
|
A:ALA904
|
4.6
|
35.4
|
1.0
|
CA
|
A:GLY900
|
4.6
|
27.6
|
1.0
|
CA
|
A:GLY901
|
4.7
|
32.3
|
1.0
|
CB
|
A:ASP928
|
4.7
|
32.5
|
1.0
|
O
|
A:GLY900
|
4.8
|
27.6
|
1.0
|
CA
|
A:ALA904
|
4.8
|
34.5
|
1.0
|
OD2
|
A:ASP923
|
4.8
|
32.9
|
1.0
|
CA
|
A:ASP905
|
4.9
|
30.3
|
1.0
|
C
|
A:ALA904
|
5.0
|
33.0
|
1.0
|
|
Strontium binding site 9 out
of 124 in 6p5t
Go back to
Strontium Binding Sites List in 6p5t
Strontium binding site 9 out
of 124 in the Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide
Mono view
Stereo pair view
|
A full contact list of Strontium with other atoms in the Sr binding
site number 9 of Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sr1138
b:28.4
occ:1.00
|
OG1
|
A:THR282
|
2.4
|
22.8
|
1.0
|
OD1
|
A:ASP259
|
2.4
|
22.6
|
1.0
|
O
|
A:THR280
|
2.4
|
20.5
|
1.0
|
O
|
A:GLY257
|
2.4
|
21.8
|
1.0
|
OD2
|
A:ASP285
|
2.5
|
19.9
|
1.0
|
O
|
A:THR255
|
2.5
|
20.6
|
1.0
|
OD1
|
A:ASP285
|
2.5
|
21.5
|
1.0
|
CG
|
A:ASP285
|
2.9
|
20.2
|
1.0
|
CG
|
A:ASP259
|
3.5
|
22.8
|
1.0
|
C
|
A:THR280
|
3.5
|
20.6
|
1.0
|
C
|
A:THR255
|
3.7
|
22.2
|
1.0
|
C
|
A:GLY257
|
3.7
|
23.4
|
1.0
|
CB
|
A:THR282
|
3.7
|
23.0
|
1.0
|
N
|
A:THR282
|
3.8
|
19.8
|
1.0
|
N
|
A:ASP259
|
4.1
|
24.2
|
1.0
|
N
|
A:THR255
|
4.1
|
19.1
|
1.0
|
CB
|
A:ASP259
|
4.3
|
21.0
|
1.0
|
CA
|
A:THR282
|
4.3
|
21.3
|
1.0
|
CG2
|
A:THR282
|
4.3
|
23.6
|
1.0
|
N
|
A:GLY257
|
4.3
|
25.4
|
1.0
|
OD2
|
A:ASP259
|
4.3
|
24.7
|
1.0
|
CA
|
A:THR280
|
4.3
|
22.0
|
1.0
|
CD2
|
A:LEU254
|
4.4
|
17.6
|
1.0
|
CB
|
A:ASP285
|
4.4
|
19.2
|
1.0
|
C
|
A:THR256
|
4.4
|
23.1
|
1.0
|
N
|
A:LEU281
|
4.5
|
27.5
|
1.0
|
O
|
A:HOH1588
|
4.5
|
27.9
|
1.0
|
CA
|
A:LEU281
|
4.5
|
25.4
|
1.0
|
CB
|
A:LEU254
|
4.5
|
20.5
|
1.0
|
CA
|
A:THR255
|
4.5
|
21.8
|
1.0
|
CA
|
A:THR258
|
4.6
|
20.1
|
1.0
|
C
|
A:LEU281
|
4.6
|
26.8
|
1.0
|
N
|
A:THR258
|
4.6
|
21.6
|
1.0
|
N
|
A:THR256
|
4.6
|
22.4
|
1.0
|
CA
|
A:GLY257
|
4.6
|
25.8
|
1.0
|
CA
|
A:THR256
|
4.6
|
22.9
|
1.0
|
O
|
A:THR282
|
4.6
|
20.2
|
1.0
|
OG1
|
A:THR255
|
4.7
|
22.9
|
1.0
|
C
|
A:THR282
|
4.7
|
21.2
|
1.0
|
C
|
A:THR258
|
4.8
|
19.1
|
1.0
|
CG
|
A:LEU254
|
4.8
|
17.7
|
1.0
|
CB
|
A:THR280
|
4.8
|
22.4
|
1.0
|
CA
|
A:ASP259
|
4.8
|
22.8
|
1.0
|
O
|
A:THR256
|
4.9
|
23.4
|
1.0
|
C
|
A:LEU254
|
5.0
|
25.7
|
1.0
|
|
Strontium binding site 10 out
of 124 in 6p5t
Go back to
Strontium Binding Sites List in 6p5t
Strontium binding site 10 out
of 124 in the Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide
Mono view
Stereo pair view
|
A full contact list of Strontium with other atoms in the Sr binding
site number 10 of Surface-Layer (S-Layer) Rsaa Protein From Caulobacter Crescentus Bound to Strontium and Iodide within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Sr1139
b:34.0
occ:1.00
|
O
|
A:HOH1970
|
2.4
|
43.6
|
1.0
|
O
|
A:HOH1757
|
2.4
|
25.4
|
1.0
|
OE2
|
A:GLU558
|
2.4
|
25.0
|
1.0
|
O
|
A:GLY530
|
2.4
|
30.9
|
1.0
|
O
|
A:HOH1420
|
2.4
|
31.6
|
1.0
|
OE1
|
A:GLU558
|
2.5
|
26.3
|
1.0
|
O
|
A:HOH1492
|
2.5
|
18.2
|
1.0
|
CD
|
A:GLU558
|
2.8
|
25.8
|
1.0
|
O
|
A:HOH1865
|
3.2
|
31.2
|
1.0
|
C
|
A:GLY530
|
3.6
|
30.6
|
1.0
|
O
|
A:HOH1964
|
3.8
|
55.5
|
1.0
|
O
|
A:HOH2070
|
3.8
|
43.6
|
1.0
|
O
|
A:HOH1533
|
4.2
|
26.7
|
1.0
|
CG
|
A:GLU558
|
4.3
|
26.7
|
1.0
|
CA
|
A:ALA531
|
4.4
|
30.8
|
1.0
|
O
|
A:HOH1766
|
4.5
|
26.7
|
1.0
|
N
|
A:ALA531
|
4.5
|
29.2
|
1.0
|
N
|
A:GLY530
|
4.5
|
28.9
|
1.0
|
CA
|
A:GLY530
|
4.6
|
29.1
|
1.0
|
N
|
A:ARG529
|
4.7
|
17.9
|
1.0
|
OD1
|
A:ASP562
|
4.7
|
28.8
|
1.0
|
CB
|
A:ALA531
|
4.8
|
29.0
|
1.0
|
OD1
|
A:ASP509
|
4.9
|
30.2
|
1.0
|
C
|
A:ARG529
|
4.9
|
20.3
|
1.0
|
O
|
A:HOH2109
|
4.9
|
52.0
|
1.0
|
|
Reference:
J.Herrmann,
P.N.Li,
F.Jabbarpour,
A.C.K.Chan,
I.Rajkovic,
T.Matsui,
L.Shapiro,
J.Smit,
T.M.Weiss,
M.E.P.Murphy,
S.Wakatsuki.
A Bacterial Surface Layer Protein Exploits Multistep Crystallization For Rapid Self-Assembly. Proc.Natl.Acad.Sci.Usa 2019.
ISSN: ESSN 1091-6490
PubMed: 31848245
DOI: 10.1073/PNAS.1909798116
Page generated: Fri Oct 11 06:50:33 2024
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