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Strontium in PDB 6ror: Rep Related 18-Mer Dna

Protein crystallography data

The structure of Rep Related 18-Mer Dna, PDB code: 6ror was solved by P.Kolenko, J.Svoboda, B.Schneider, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.42 / 2.60
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 38.473, 38.473, 90.783, 90.00, 90.00, 90.00
R / Rfree (%) 23.1 / 30.3

Other elements in 6ror:

The structure of Rep Related 18-Mer Dna also contains other interesting chemical elements:

Bromine (Br) 1 atom

Strontium Binding Sites:

The binding sites of Strontium atom in the Rep Related 18-Mer Dna (pdb code 6ror). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 2 binding sites of Strontium where determined in the Rep Related 18-Mer Dna, PDB code: 6ror:
Jump to Strontium binding site number: 1; 2;

Strontium binding site 1 out of 2 in 6ror

Go back to Strontium Binding Sites List in 6ror
Strontium binding site 1 out of 2 in the Rep Related 18-Mer Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Rep Related 18-Mer Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr101

b:0.9
occ:0.50
O4 A:BRU9 2.4 0.6 1.0
C4 A:BRU9 3.6 0.4 1.0
N3 A:BRU9 4.2 0.4 1.0
N4 A:DC8 4.2 0.5 1.0
C5 A:BRU9 4.7 0.5 1.0
C5 A:DC8 4.7 0.8 1.0
O4 A:DT10 4.8 0.3 1.0
C4 A:DC8 4.9 0.5 1.0

Strontium binding site 2 out of 2 in 6ror

Go back to Strontium Binding Sites List in 6ror
Strontium binding site 2 out of 2 in the Rep Related 18-Mer Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Rep Related 18-Mer Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr102

b:0.2
occ:1.00
N4 A:DC12 4.6 0.2 1.0
N4 A:DC13 4.7 0.5 1.0

Reference:

P.Kolenko, J.Svoboda, B.Schneider. Rep Related 18-Mer Dna To Be Published.
Page generated: Fri Oct 11 06:50:27 2024

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