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Strontium in PDB 6ros: Rep Related 18-Mer Dna

Protein crystallography data

The structure of Rep Related 18-Mer Dna, PDB code: 6ros was solved by P.Kolenko, J.Svoboda, B.Schneider, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.33 / 2.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 38.440, 38.440, 89.579, 90.00, 90.00, 90.00
R / Rfree (%) 24.2 / 27.9

Strontium Binding Sites:

The binding sites of Strontium atom in the Rep Related 18-Mer Dna (pdb code 6ros). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 3 binding sites of Strontium where determined in the Rep Related 18-Mer Dna, PDB code: 6ros:
Jump to Strontium binding site number: 1; 2; 3;

Strontium binding site 1 out of 3 in 6ros

Go back to Strontium Binding Sites List in 6ros
Strontium binding site 1 out of 3 in the Rep Related 18-Mer Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Rep Related 18-Mer Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr101

b:0.6
occ:0.50
O4 A:DT9 2.2 0.8 1.0
C4 A:DT9 3.4 0.3 1.0
N3 A:DT9 4.0 0.4 1.0
N4 A:DC8 4.1 0.6 1.0
C5 A:DT9 4.5 0.8 1.0
C7 A:DT9 4.7 0.8 1.0
O4 A:DT10 4.8 0.8 1.0
C5 A:DC8 4.9 0.4 1.0
C4 A:DC8 5.0 0.7 1.0

Strontium binding site 2 out of 3 in 6ros

Go back to Strontium Binding Sites List in 6ros
Strontium binding site 2 out of 3 in the Rep Related 18-Mer Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Rep Related 18-Mer Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr102

b:0.2
occ:1.00
N4 A:DC12 4.3 0.4 1.0
N4 A:DC13 4.4 0.6 1.0

Strontium binding site 3 out of 3 in 6ros

Go back to Strontium Binding Sites List in 6ros
Strontium binding site 3 out of 3 in the Rep Related 18-Mer Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of Rep Related 18-Mer Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr103

b:0.1
occ:1.00
N6 A:DA16 4.1 97.0 1.0
N4 A:DC17 4.6 89.9 1.0

Reference:

P.Kolenko, J.Svoboda, B.Schneider. Rep Related 18-Mer Dna To Be Published.
Page generated: Wed Dec 16 02:25:15 2020

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