Strontium in PDB 7ei5: Gnra Tetraloop Receptor Motif Composed of Rna and Dna

The structure of Gnra Tetraloop Receptor Motif Composed of Rna and Dna, PDB code: 7ei5 was solved by J.Kondo, A.Hayasaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.44 / 2.90
Space group	H 3
Cell size a, b, c (Å), α, β, γ (°)	83.22, 83.22, 67.164, 90, 90, 120
R / Rfree (%)	17.2 / 19.9

The structure of Gnra Tetraloop Receptor Motif Composed of Rna and Dna also contains other interesting chemical elements:

Cobalt

(Co)

2 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Strontium atom in the Gnra Tetraloop Receptor Motif Composed of Rna and Dna (pdb code 7ei5). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 17 binding sites of Strontium where determined in the Gnra Tetraloop Receptor Motif Composed of Rna and Dna, PDB code: 7ei5:
Jump to Strontium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Strontium binding site 1 out of 17 in the Gnra Tetraloop Receptor Motif Composed of Rna and Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Gnra Tetraloop Receptor Motif Composed of Rna and Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr103 b:67.8 occ:0.52 SR A:SR103 0.0 67.8 0.5 SR A:SR103 2.9 47.4 0.5 OP2 A:G12 3.1 42.0 1.0 OP2 A:A11 3.1 35.9 1.0 N7 A:G12 4.4 34.3 1.0 O6 A:G13 4.4 36.1 1.0 P A:G12 4.5 55.0 1.0 SR A:SR106 4.5 137.0 1.0 N7 A:G13 4.6 31.4 1.0 P A:A11 4.6 50.3 1.0 C8 A:G12 4.8 39.2 1.0 O5' A:G12 4.9 31.9 1.0

Strontium binding site 2 out of 17 in the Gnra Tetraloop Receptor Motif Composed of Rna and Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Gnra Tetraloop Receptor Motif Composed of Rna and Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr103 b:47.4 occ:0.48 SR A:SR103 0.0 47.4 0.5 O2' A:A10 2.5 59.3 1.0 O6 A:G13 2.8 36.1 1.0 N7 A:G12 2.8 34.3 1.0 SR A:SR103 2.9 67.8 0.5 O6 A:G12 3.0 36.5 1.0 OP2 A:A11 3.2 35.9 1.0 C5 A:G12 3.5 34.2 1.0 C6 A:G12 3.5 36.8 1.0 C6 A:G13 3.6 28.8 1.0 C2' A:A10 3.6 40.9 1.0 N7 A:G13 3.8 31.4 1.0 O3' A:A10 3.9 48.1 1.0 C8 A:G12 4.0 39.2 1.0 C5 A:G13 4.0 25.5 1.0 C3' A:A10 4.0 36.1 1.0 P A:A11 4.2 50.3 1.0 O4 A:DT25 4.4 36.1 1.0 N4 A:DC24 4.5 32.7 1.0 N7 A:A11 4.7 38.8 1.0 C4 A:G12 4.8 30.5 1.0 N1 A:G13 4.8 28.1 1.0 OP2 A:G12 4.8 42.0 1.0 N1 A:G12 4.9 35.2 1.0 C1' A:A10 4.9 26.0 1.0 N3 A:DT25 4.9 24.1 1.0 C8 A:A11 5.0 35.0 1.0 N9 A:G12 5.0 32.1 1.0

Strontium binding site 3 out of 17 in the Gnra Tetraloop Receptor Motif Composed of Rna and Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of Gnra Tetraloop Receptor Motif Composed of Rna and Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr104 b:45.6 occ:1.00 O6 A:G17 2.5 46.9 1.0 O4 A:U16 2.5 36.7 1.0 C6 A:G17 3.5 35.5 1.0 C4 A:U16 3.7 35.0 1.0 N1 A:G17 4.3 42.2 1.0 C5 A:U16 4.5 24.8 1.0 C5 A:G17 4.5 31.0 1.0 N3 A:U16 4.7 28.7 1.0 N7 A:A15 4.7 28.0 1.0 N6 A:A15 4.7 28.9 1.0 N7 A:G17 4.9 36.6 1.0

Strontium binding site 4 out of 17 in the Gnra Tetraloop Receptor Motif Composed of Rna and Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 4 of Gnra Tetraloop Receptor Motif Composed of Rna and Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr105 b:63.6 occ:1.00 N7 A:G17 4.4 36.6 1.0 OP1 A:A19 4.5 44.0 1.0 OP2 A:A19 4.7 33.1 1.0 O6 A:G17 4.7 46.9 1.0 C5 A:G17 5.0 31.0 1.0 P A:A19 5.0 42.6 1.0

Strontium binding site 5 out of 17 in the Gnra Tetraloop Receptor Motif Composed of Rna and Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 5 of Gnra Tetraloop Receptor Motif Composed of Rna and Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr106 b:137.0 occ:1.00 OP2 A:DG21 4.1 40.5 1.0 SR A:SR103 4.5 67.8 0.5

Strontium binding site 6 out of 17 in the Gnra Tetraloop Receptor Motif Composed of Rna and Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 6 of Gnra Tetraloop Receptor Motif Composed of Rna and Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr107 b:123.7 occ:1.00 OP1 A:DG28 3.3 74.2 1.0 OP2 A:DC29 3.8 32.9 1.0 P A:DG28 4.5 62.7 1.0 OP2 A:DG28 4.7 41.2 1.0 P A:DC29 5.0 34.3 1.0

Strontium binding site 7 out of 17 in the Gnra Tetraloop Receptor Motif Composed of Rna and Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 7 of Gnra Tetraloop Receptor Motif Composed of Rna and Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr108 b:111.8 occ:1.00 O6 A:G3 4.5 37.9 1.0 O6 A:DG32 4.6 37.1 1.0 N7 A:A2 4.9 35.5 1.0

Strontium binding site 8 out of 17 in the Gnra Tetraloop Receptor Motif Composed of Rna and Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 8 of Gnra Tetraloop Receptor Motif Composed of Rna and Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr109 b:95.4 occ:1.00 OP2 A:A5 4.7 33.0 1.0 OP1 A:DA26 4.7 27.7 1.0 OP1 A:A5 4.9 52.6 1.0

Strontium binding site 9 out of 17 in the Gnra Tetraloop Receptor Motif Composed of Rna and Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 9 of Gnra Tetraloop Receptor Motif Composed of Rna and Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr110 b:101.0 occ:1.00 OP1 A:G3 4.1 52.9 1.0 OP1 A:A2 4.9 66.9 1.0

Strontium binding site 10 out of 17 in the Gnra Tetraloop Receptor Motif Composed of Rna and Dna


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 10 of Gnra Tetraloop Receptor Motif Composed of Rna and Dna within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr111 b:120.9 occ:1.00 N3 A:A5 4.5 34.9 1.0 N3 A:DG32 4.5 30.4 1.0 O4' A:DC33 4.6 46.4 1.0 O2' A:A5 4.7 41.5 1.0 N2 A:DG32 4.8 30.0 1.0

J.Kondo, A.Hayasaka. Rna Gnra Tetraloop and Tetraloop Receptor Motifs To Be Published.