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Strontium in PDB 7tce: Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.

Enzymatic activity of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.

All present enzymatic activity of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.:
7.1.1.8;

Protein crystallography data

The structure of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone., PDB code: 7tce was solved by L.Esser, D.Xia, F.Zhou, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.43 / 3.85
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 127.273, 156.388, 141.407, 90, 96.67, 90
R / Rfree (%) 24.1 / 27.3

Other elements in 7tce:

The structure of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms
Iron (Fe) 20 atoms

Strontium Binding Sites:

The binding sites of Strontium atom in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. (pdb code 7tce). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 6 binding sites of Strontium where determined in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone., PDB code: 7tce:
Jump to Strontium binding site number: 1; 2; 3; 4; 5; 6;

Strontium binding site 1 out of 6 in 7tce

Go back to Strontium Binding Sites List in 7tce
Strontium binding site 1 out of 6 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr1005

b:197.8
occ:1.00
HE1 A:TRP313 4.1 258.7 1.0
HB2 A:ASP311 4.4 259.6 1.0
OE1 A:GLN316 4.9 196.7 1.0
NE1 A:TRP313 4.9 215.5 1.0

Strontium binding site 2 out of 6 in 7tce

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Strontium binding site 2 out of 6 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr1002

b:451.8
occ:1.00
OE1 B:GLU14 2.5 203.5 1.0
OD1 B:ASP8 2.5 238.0 1.0
OE2 B:GLU129 2.6 201.6 1.0
OE1 B:GLU129 2.6 202.5 1.0
O B:VAL9 2.6 231.7 1.0
OE2 B:GLU14 2.6 203.6 1.0
CD B:GLU129 2.7 200.0 1.0
CD B:GLU14 2.9 204.1 1.0
H B:VAL9 3.4 278.1 1.0
C B:VAL9 3.6 229.8 1.0
HG2 B:GLU129 3.7 233.1 1.0
CG B:ASP8 3.7 237.1 1.0
CG B:GLU129 3.8 194.2 1.0
N B:VAL9 3.9 231.7 1.0
HA B:PRO10 3.9 275.0 1.0
H B:PHE11 4.0 279.0 1.0
HA B:ASP8 4.2 278.6 1.0
HZ B:PHE110 4.2 212.9 1.0
HD2 B:PHE11 4.3 267.8 1.0
HG3 B:GLU129 4.4 233.1 1.0
CA B:VAL9 4.4 229.6 1.0
OD2 B:ASP8 4.4 238.3 1.0
CG B:GLU14 4.4 205.8 1.0
N B:PRO10 4.5 228.4 1.0
HE2 B:PHE110 4.5 214.3 1.0
C B:ASP8 4.6 234.6 1.0
CA B:PRO10 4.6 229.1 1.0
HB B:VAL9 4.6 274.4 1.0
HB3 B:GLU129 4.7 223.4 1.0
CA B:ASP8 4.7 232.1 1.0
HG2 B:GLU14 4.7 247.1 1.0
N B:PHE11 4.8 232.4 1.0
CB B:ASP8 4.8 234.8 1.0
HG3 B:GLU14 4.9 247.1 1.0
CB B:GLU129 4.9 186.1 1.0
CZ B:PHE110 4.9 177.4 1.0
HB3 B:GLU14 5.0 249.6 1.0
HB2 B:PHE11 5.0 272.4 1.0

Strontium binding site 3 out of 6 in 7tce

Go back to Strontium Binding Sites List in 7tce
Strontium binding site 3 out of 6 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Sr1006

b:172.8
occ:1.00
HE1 E:TRP313 3.2 210.5 1.0
HE1 K:TRP313 3.8 216.9 1.0
NE1 E:TRP313 4.0 175.3 1.0
HB2 E:ASP311 4.2 235.7 1.0
HD1 E:TRP313 4.3 210.3 1.0
HB2 K:ASP311 4.5 210.6 1.0
O E:ASP311 4.5 195.0 1.0
OE1 K:GLN316 4.5 165.7 1.0
CD1 E:TRP313 4.6 175.2 1.0
NE1 K:TRP313 4.6 180.7 1.0
HD1 K:TRP313 4.6 213.0 1.0
OE1 E:GLN316 4.8 177.1 1.0
O K:ASP311 4.8 160.0 1.0
CD1 K:TRP313 5.0 177.4 1.0

Strontium binding site 4 out of 6 in 7tce

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Strontium binding site 4 out of 6 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 4 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Sr1002

b:287.9
occ:1.00
OE1 F:GLU14 2.5 206.6 1.0
OD1 F:ASP8 2.6 217.9 1.0
OE2 F:GLU129 2.6 222.4 1.0
OE1 F:GLU129 2.6 222.7 1.0
O F:VAL9 2.6 202.5 1.0
OE2 F:GLU14 2.6 206.4 1.0
CD F:GLU129 2.8 218.4 1.0
CD F:GLU14 2.9 206.7 1.0
H F:VAL9 3.5 258.7 1.0
C F:VAL9 3.6 201.9 1.0
CG F:ASP8 3.8 218.0 1.0
HA F:PRO10 3.8 236.8 1.0
HZ F:PHE110 3.8 210.6 1.0
N F:VAL9 4.0 215.5 1.0
H F:PHE11 4.0 244.3 1.0
HG2 F:GLU129 4.0 247.8 1.0
CG F:GLU129 4.0 206.4 1.0
HD2 F:PHE11 4.2 236.9 1.0
HA F:ASP8 4.3 261.4 1.0
OD2 F:ASP8 4.4 217.6 1.0
CA F:VAL9 4.4 206.3 1.0
CG F:GLU14 4.4 206.5 1.0
N F:PRO10 4.5 197.2 1.0
HE2 F:PHE110 4.5 210.9 1.0
HG3 F:GLU129 4.5 247.8 1.0
CA F:PRO10 4.6 197.2 1.0
CZ F:PHE110 4.6 175.4 1.0
C F:ASP8 4.6 222.8 1.0
HB F:VAL9 4.7 241.0 1.0
N F:PHE11 4.8 203.5 1.0
HG2 F:GLU14 4.8 247.9 1.0
CA F:ASP8 4.8 217.8 1.0
HB3 F:GLU129 4.8 231.1 1.0
HG3 F:GLU14 4.9 247.9 1.0
CB F:ASP8 4.9 218.1 1.0
O F:ASN123 5.0 174.6 1.0
CE2 F:PHE110 5.0 175.7 1.0
HB2 F:PHE11 5.0 243.7 1.0
HB3 F:GLU14 5.0 246.3 1.0

Strontium binding site 5 out of 6 in 7tce

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Strontium binding site 5 out of 6 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 5 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Sr1002

b:475.0
occ:1.00
OE1 L:GLU14 2.5 173.0 1.0
OD1 L:ASP8 2.5 212.6 1.0
OE2 L:GLU129 2.6 198.1 1.0
OE1 L:GLU129 2.6 199.2 1.0
OE2 L:GLU14 2.6 172.6 1.0
O L:VAL9 2.6 204.7 1.0
CD L:GLU129 2.8 196.5 1.0
CD L:GLU14 2.9 173.6 1.0
H L:VAL9 3.4 255.7 1.0
C L:VAL9 3.6 204.6 1.0
CG L:ASP8 3.8 211.6 1.0
HA L:PRO10 3.8 242.3 1.0
N L:VAL9 3.9 213.0 1.0
HZ L:PHE110 4.0 204.7 1.0
HG2 L:GLU129 4.0 228.6 1.0
CG L:GLU129 4.1 190.4 1.0
H L:PHE11 4.1 235.6 1.0
HA L:ASP8 4.2 252.9 1.0
CG L:GLU14 4.4 175.6 1.0
OD2 L:ASP8 4.4 212.5 1.0
CA L:VAL9 4.4 206.3 1.0
N L:PRO10 4.5 202.9 1.0
CA L:PRO10 4.5 201.8 1.0
HD2 L:PHE11 4.6 194.9 1.0
HG3 L:GLU129 4.6 228.6 1.0
C L:ASP8 4.6 215.0 1.0
HG2 L:GLU14 4.6 210.8 1.0
HB L:VAL9 4.7 241.5 1.0
CA L:ASP8 4.8 210.7 1.0
HE1 L:PHE110 4.8 205.6 1.0
CZ L:PHE110 4.8 170.5 1.0
HB3 L:GLU129 4.8 219.8 1.0
CB L:ASP8 4.9 210.2 1.0
HB3 L:GLU14 4.9 213.5 1.0
N L:PHE11 4.9 196.3 1.0
HG3 L:GLU14 4.9 210.8 1.0

Strontium binding site 6 out of 6 in 7tce

Go back to Strontium Binding Sites List in 7tce
Strontium binding site 6 out of 6 in the Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone.


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 6 of Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. within 5.0Å range:
probe atom residue distance (Å) B Occ
P:Sr1002

b:434.8
occ:1.00
OE1 P:GLU14 2.5 240.4 1.0
OD1 P:ASP8 2.5 234.8 1.0
OE2 P:GLU129 2.6 234.8 1.0
OE1 P:GLU129 2.6 235.4 1.0
OE2 P:GLU14 2.6 240.0 1.0
O P:VAL9 2.6 242.6 1.0
CD P:GLU129 2.8 233.6 1.0
CD P:GLU14 2.9 240.7 1.0
H P:VAL9 3.5 299.7 1.0
C P:VAL9 3.6 241.1 1.0
CG P:ASP8 3.7 235.3 1.0
HZ P:PHE110 3.8 226.4 1.0
HA P:PRO10 3.9 278.7 1.0
N P:VAL9 3.9 249.7 1.0
H P:PHE11 4.0 284.5 1.0
CG P:GLU129 4.2 227.4 1.0
HG2 P:GLU129 4.2 273.0 1.0
HA P:ASP8 4.3 290.5 1.0
HD2 P:PHE11 4.3 283.8 1.0
OD2 P:ASP8 4.3 234.6 1.0
CG P:GLU14 4.4 241.5 1.0
CA P:VAL9 4.4 245.8 1.0
N P:PRO10 4.5 234.9 1.0
HE2 P:PHE110 4.5 229.3 1.0
CZ P:PHE110 4.6 188.6 1.0
C P:ASP8 4.6 249.1 1.0
CA P:PRO10 4.6 232.2 1.0
HG3 P:GLU129 4.7 273.0 1.0
HG2 P:GLU14 4.7 289.9 1.0
O P:ASN123 4.7 176.7 1.0
HB P:VAL9 4.7 294.9 1.0
N P:PHE11 4.8 237.0 1.0
CA P:ASP8 4.8 242.0 1.0
CB P:ASP8 4.8 237.7 1.0
HG3 P:GLU14 4.9 289.9 1.0
HB3 P:GLU14 4.9 289.3 1.0
HB3 P:GLU129 4.9 260.9 1.0
CE2 P:PHE110 4.9 191.0 1.0
HB2 P:GLU14 5.0 289.3 1.0

Reference:

L.Esser, D.Xia, F.Zhou. Crystal Structure of Delta Sub IV Rhodobacter Sphaeroides BC1 with the Antimalarial Drug Atovaquone. To Be Published.
Page generated: Fri Oct 11 07:12:38 2024

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