Strontium in PDB 7uz0: Antit-Trna Flip Ucca

The structure of Antit-Trna Flip Ucca, PDB code: 7uz0 was solved by I.R.Price, J.C.Grigg, A.Ke, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.61 / 3.03
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	46.168, 56.695, 268.908, 90, 90, 90
R / Rfree (%)	24.6 / 27.7

The structure of Antit-Trna Flip Ucca also contains other interesting chemical elements:

Magnesium

(Mg)

5 atoms

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 19;

Binding sites:

The binding sites of Strontium atom in the Antit-Trna Flip Ucca (pdb code 7uz0). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 19 binding sites of Strontium where determined in the Antit-Trna Flip Ucca, PDB code: 7uz0:
Jump to Strontium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Strontium binding site 1 out of 19 in the Antit-Trna Flip Ucca


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Antit-Trna Flip Ucca within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr101 b:116.0 occ:1.00 SR A:SR108 2.9 141.1 1.0 O6 A:G46 4.3 56.4 1.0 N7 A:G46 4.7 46.9 1.0 O6 A:G45 4.8 49.1 1.0 N7 A:G45 4.9 50.5 1.0

Strontium binding site 2 out of 19 in the Antit-Trna Flip Ucca


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Antit-Trna Flip Ucca within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr102 b:158.7 occ:1.00 O4 A:U44 3.5 78.7 1.0 O6 A:G43 3.9 66.0 1.0 N7 A:G43 4.0 62.6 1.0 C4 A:U44 4.4 78.9 1.0 N7 A:G42 4.6 61.4 1.0 C6 A:G43 4.6 61.1 1.0 C5 A:G43 4.6 62.8 1.0 O6 A:G42 5.0 62.1 1.0

Strontium binding site 3 out of 19 in the Antit-Trna Flip Ucca


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of Antit-Trna Flip Ucca within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr103 b:166.2 occ:1.00 OP2 A:U12 2.6 134.5 1.0 OP2 A:U8 3.1 112.7 1.0 P A:U12 3.8 131.1 1.0 OP1 A:U12 4.2 141.3 1.0 P A:U8 4.3 96.8 1.0 O5' A:U12 4.4 116.9 1.0 OP1 A:U8 4.7 105.7 1.0 OP2 A:C13 4.7 120.3 1.0 OP2 A:A9 4.9 95.7 1.0

Strontium binding site 4 out of 19 in the Antit-Trna Flip Ucca


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 4 of Antit-Trna Flip Ucca within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr104 b:176.2 occ:1.00 OP1 A:A9 2.9 97.8 1.0 OP2 A:G10 3.7 126.0 1.0 P A:A9 4.2 95.2 1.0 OP2 A:U11 4.3 111.0 1.0 C5' A:A9 4.4 114.7 1.0 O5' A:A9 4.5 113.3 1.0 OP1 A:U8 4.6 105.7 1.0 C3' A:A9 5.0 106.6 1.0

Strontium binding site 5 out of 19 in the Antit-Trna Flip Ucca


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 5 of Antit-Trna Flip Ucca within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr105 b:128.2 occ:1.00 O6 A:G41 3.8 59.7 1.0 OP2 A:A40 4.0 61.9 1.0 N1 A:G37 4.4 64.9 1.0 N7 A:G41 4.4 58.5 1.0 O6 A:G37 4.6 71.5 1.0 C6 A:G41 4.7 59.7 1.0 C6 A:G37 5.0 68.5 1.0 C5 A:G41 5.0 58.8 1.0

Strontium binding site 6 out of 19 in the Antit-Trna Flip Ucca


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 6 of Antit-Trna Flip Ucca within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr106 b:175.6 occ:1.00 OP1 A:C26 3.3 136.1 1.0 OP1 A:C52 3.3 120.2 1.0 OP2 A:C26 3.9 99.8 1.0 P A:C26 4.0 115.2 1.0 P A:C52 4.2 63.6 1.0 OP2 A:C52 4.2 69.7 1.0 O3' A:A25 4.5 100.5 1.0 MG A:MG123 4.6 96.5 1.0 OP2 A:A53 4.7 69.4 1.0

Strontium binding site 7 out of 19 in the Antit-Trna Flip Ucca


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 7 of Antit-Trna Flip Ucca within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr107 b:149.1 occ:1.00 O4 A:U70 2.7 118.1 1.0 C4 A:U70 3.7 121.8 1.0 OP2 A:U69 4.1 121.7 1.0 C5 A:U70 4.1 139.3 1.0 OP2 A:G68 4.2 129.8 1.0 OP1 A:G72 4.5 121.2 1.0 C5 A:U69 4.8 133.6 1.0 N3 A:U70 4.9 123.0 1.0

Strontium binding site 8 out of 19 in the Antit-Trna Flip Ucca


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 8 of Antit-Trna Flip Ucca within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr108 b:141.1 occ:1.00 SR A:SR101 2.9 116.0 1.0 O6 A:G45 3.2 49.1 1.0 C6 A:G45 4.2 55.9 1.0 O6 A:G46 4.2 56.4 1.0 N7 A:G45 4.3 50.5 1.0 C5 A:G45 4.6 48.0 1.0

Strontium binding site 9 out of 19 in the Antit-Trna Flip Ucca


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 9 of Antit-Trna Flip Ucca within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr109 b:76.9 occ:1.00 OP1 A:U44 2.9 92.2 1.0 P A:U44 4.1 81.8 1.0 OP2 A:U44 4.4 67.6 1.0 OP2 A:G45 4.5 76.8 1.0 O5' A:U44 4.9 69.3 1.0

Strontium binding site 10 out of 19 in the Antit-Trna Flip Ucca


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 10 of Antit-Trna Flip Ucca within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr110 b:81.8 occ:1.00 N7 A:G17 3.7 128.7 1.0 O6 A:G17 4.0 121.7 1.0 O6 A:G72 4.0 133.5 1.0 C5 A:G17 4.3 121.9 1.0 C6 A:G17 4.4 128.9 1.0 C8 A:G17 4.6 120.9 1.0 O2' A:U70 4.8 126.0 1.0

J.C.Grigg, I.R.Price, A.Ke. Trna Fusion to Streamline Rna Structure Determination: Case Studies in Probing Aminoacyl-Trna Sensing Mechanisms By the T-Box Riboswitch To Be Published.