Strontium in PDB 7ei9: Rna Kink-Turn Motif with Pyrrolo Cytosine

The structure of Rna Kink-Turn Motif with Pyrrolo Cytosine, PDB code: 7ei9 was solved by J.Kondo, T.Miyauchi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.26 / 2.70
Space group	P 42 21 2
Cell size a, b, c (Å), α, β, γ (°)	76.416, 76.416, 41.197, 90, 90, 90
R / Rfree (%)	22.7 / 24.6

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Strontium atom in the Rna Kink-Turn Motif with Pyrrolo Cytosine (pdb code 7ei9). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 11 binding sites of Strontium where determined in the Rna Kink-Turn Motif with Pyrrolo Cytosine, PDB code: 7ei9:
Jump to Strontium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Strontium binding site 1 out of 11 in the Rna Kink-Turn Motif with Pyrrolo Cytosine


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Rna Kink-Turn Motif with Pyrrolo Cytosine within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr101 b:70.7 occ:1.00 O6 A:G14 2.2 62.7 1.0 C6 A:G14 3.2 67.3 1.0 N1 A:G14 4.0 57.5 1.0 OP2 A:G13 4.1 76.0 1.0 C5 A:G14 4.2 66.9 1.0 OP2 A:G12 4.5 83.2 1.0 N7 A:G14 4.5 69.7 1.0 O2' B:G7 4.6 62.7 1.0 O6 A:G15 4.7 63.1 1.0 N7 A:G13 4.8 68.2 1.0

Strontium binding site 2 out of 11 in the Rna Kink-Turn Motif with Pyrrolo Cytosine


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Rna Kink-Turn Motif with Pyrrolo Cytosine within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr102 b:98.8 occ:1.00 O6 A:G1 2.5 50.7 1.0 N7 A:G1 3.2 50.0 1.0 C6 A:G1 3.3 36.2 1.0 C5 A:G1 3.6 35.2 1.0 C8 A:G1 4.4 42.4 1.0 N4 B:C19 4.6 41.3 1.0 N1 A:G1 4.6 36.6 1.0 O6 A:G2 4.8 46.0 1.0 C4 A:G1 4.9 32.4 1.0

Strontium binding site 3 out of 11 in the Rna Kink-Turn Motif with Pyrrolo Cytosine


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 3 of Rna Kink-Turn Motif with Pyrrolo Cytosine within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr103 b:125.9 occ:1.00 O6 A:G4 3.3 64.4 1.0 N4 A:C3 3.9 48.2 1.0 C6 A:G4 4.5 53.0 1.0 C4 A:C3 5.0 49.2 1.0

Strontium binding site 4 out of 11 in the Rna Kink-Turn Motif with Pyrrolo Cytosine


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 4 of Rna Kink-Turn Motif with Pyrrolo Cytosine within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr104 b:140.7 occ:1.00 OP2 A:A8 3.9 55.1 1.0 O6 B:G12 4.1 70.5 1.0 O6 B:G13 4.2 71.9 1.0 N4 B:C11 4.6 74.2 1.0 N4 A:C10 4.9 63.6 1.0 P A:A8 4.9 53.2 1.0 N1 B:G14 4.9 58.3 1.0 OP1 A:A8 5.0 43.8 1.0

Strontium binding site 5 out of 11 in the Rna Kink-Turn Motif with Pyrrolo Cytosine


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 5 of Rna Kink-Turn Motif with Pyrrolo Cytosine within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr105 b:128.2 occ:1.00 O6 A:G12 3.9 68.6 1.0 O6 A:G13 4.2 70.3 1.0 N4 B:C10 4.3 71.1 1.0 N4 A:C11 4.5 71.0 1.0 N4 B:C11 4.6 74.2 1.0 OP2 B:A8 4.8 57.7 1.0 C6 A:G12 5.0 64.7 1.0

Strontium binding site 6 out of 11 in the Rna Kink-Turn Motif with Pyrrolo Cytosine


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 6 of Rna Kink-Turn Motif with Pyrrolo Cytosine within 5.0Å range: probe atom residue distance (Å) B Occ A:Sr106 b:65.9 occ:1.00 O2 A:4PC6 2.5 63.6 1.0 C2' A:4PC6 3.6 47.3 1.0 C2 A:4PC6 3.7 46.7 1.0 C1' A:4PC6 4.0 45.0 1.0 OP1 A:A5 4.2 42.1 1.0 N1 A:4PC6 4.3 45.0 1.0 O3' A:4PC6 4.6 55.4 1.0 OP1 A:G4 4.6 54.4 1.0 N3 A:4PC6 4.7 46.4 1.0 C3' A:4PC6 4.8 52.5 1.0

Strontium binding site 7 out of 11 in the Rna Kink-Turn Motif with Pyrrolo Cytosine


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 7 of Rna Kink-Turn Motif with Pyrrolo Cytosine within 5.0Å range: probe atom residue distance (Å) B Occ B:Sr101 b:67.0 occ:1.00 O6 B:G14 2.3 59.8 1.0 C6 B:G14 3.4 60.5 1.0 O2' A:G7 3.7 56.0 1.0 OP2 B:G13 4.2 79.2 1.0 N1 B:G14 4.3 58.3 1.0 C5 B:G14 4.3 58.7 1.0 O6 B:G15 4.4 50.3 1.0 OP2 B:G12 4.4 70.6 1.0 N7 B:G14 4.6 60.8 1.0 C2' A:G7 4.8 45.0 1.0 N7 B:G13 4.8 57.6 1.0

Strontium binding site 8 out of 11 in the Rna Kink-Turn Motif with Pyrrolo Cytosine


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 8 of Rna Kink-Turn Motif with Pyrrolo Cytosine within 5.0Å range: probe atom residue distance (Å) B Occ B:Sr102 b:96.7 occ:1.00 O2 B:4PC6 2.4 73.0 1.0 C2' B:4PC6 3.5 43.0 1.0 C2 B:4PC6 3.7 52.6 1.0 C1' B:4PC6 3.9 55.3 1.0 O3' B:4PC6 4.2 48.9 1.0 N1 B:4PC6 4.3 46.9 1.0 OP1 B:A5 4.3 50.3 1.0 C3' B:4PC6 4.5 48.0 1.0 N3 B:4PC6 4.7 54.7 1.0 OP1 B:G4 4.9 58.5 1.0

Strontium binding site 9 out of 11 in the Rna Kink-Turn Motif with Pyrrolo Cytosine


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 9 of Rna Kink-Turn Motif with Pyrrolo Cytosine within 5.0Å range: probe atom residue distance (Å) B Occ B:Sr103 b:135.6 occ:1.00 N7 B:G4 4.6 50.0 1.0 O6 B:G4 4.6 60.1 1.0 OP2 B:C3 4.8 61.9 1.0 C5 B:C3 4.9 46.3 1.0

Strontium binding site 10 out of 11 in the Rna Kink-Turn Motif with Pyrrolo Cytosine


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 10 of Rna Kink-Turn Motif with Pyrrolo Cytosine within 5.0Å range: probe atom residue distance (Å) B Occ B:Sr104 b:121.9 occ:0.50 O6 B:G1 3.5 62.8 1.0 N7 B:G1 4.4 56.5 1.0 C6 B:G1 4.4 53.7 1.0 C5 B:G1 4.8 48.8 1.0

J.Kondo, T.Miyauchi. Rna Kink-Turn Motif with Pyrrolo Cytosine To Be Published.