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Strontium in PDB 8k30: Crystal Structure of A Medaka Mascrna U23G

Protein crystallography data

The structure of Crystal Structure of A Medaka Mascrna U23G, PDB code: 8k30 was solved by Y.He, J.Deng, X.Lin, L.Huang, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.86 / 2.43
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 157.94, 29.147, 99.179, 90, 118, 90
R / Rfree (%) 26.4 / 28.4

Other elements in 8k30:

The structure of Crystal Structure of A Medaka Mascrna U23G also contains other interesting chemical elements:

Sodium (Na) 11 atoms

Strontium Binding Sites:

The binding sites of Strontium atom in the Crystal Structure of A Medaka Mascrna U23G (pdb code 8k30). This binding sites where shown within 5.0 Angstroms radius around Strontium atom.
In total 2 binding sites of Strontium where determined in the Crystal Structure of A Medaka Mascrna U23G, PDB code: 8k30:
Jump to Strontium binding site number: 1; 2;

Strontium binding site 1 out of 2 in 8k30

Go back to Strontium Binding Sites List in 8k30
Strontium binding site 1 out of 2 in the Crystal Structure of A Medaka Mascrna U23G


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 1 of Crystal Structure of A Medaka Mascrna U23G within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Sr109

b:104.6
occ:1.00
O2' A:A42 3.9 73.5 1.0
N7 A:G36 4.5 57.7 1.0
O6 A:G37 4.5 56.9 1.0
C2' A:A42 4.5 68.7 1.0
O6 A:G36 4.6 60.4 1.0
N7 A:G37 4.9 57.0 1.0
O4 A:U38 4.9 57.2 1.0

Strontium binding site 2 out of 2 in 8k30

Go back to Strontium Binding Sites List in 8k30
Strontium binding site 2 out of 2 in the Crystal Structure of A Medaka Mascrna U23G


Mono view


Stereo pair view

A full contact list of Strontium with other atoms in the Sr binding site number 2 of Crystal Structure of A Medaka Mascrna U23G within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Sr104

b:110.8
occ:1.00
O2 B:U43 2.6 93.8 1.0
O6 B:G11 2.9 101.9 1.0
C2 B:U43 3.6 90.7 1.0
N3 B:U43 4.0 92.4 1.0
C6 B:G11 4.0 101.6 1.0
OP1 B:G7 4.2 81.3 1.0
O4 B:U9 4.6 102.1 1.0
O4' B:U44 4.6 81.8 1.0
N1 B:G11 4.7 98.7 1.0
O6 B:G10 4.8 103.8 1.0
N1 B:U43 4.9 88.6 1.0
C5 B:U9 4.9 103.7 1.0
N7 B:G10 5.0 101.7 1.0

Reference:

Y.He, J.Deng, X.Lin, L.Huang. Crystal Structure of Mascrna and Menrna To Be Published.
Page generated: Sun Feb 9 00:00:24 2025

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